Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   MKR81_RS11005 Genome accession   NZ_CP092682
Coordinates   2383425..2384429 (-) Length   334 a.a.
NCBI ID   WP_009698277.1    Uniprot ID   K5U0H4
Organism   Vibrio campbellii strain IFL1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2378425..2389429
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKR81_RS10975 (MKR81_10975) tolQ 2378529..2379227 (-) 699 WP_005426224.1 protein TolQ -
  MKR81_RS10980 (MKR81_10980) ybgC 2379217..2379636 (-) 420 WP_005426200.1 tol-pal system-associated acyl-CoA thioesterase -
  MKR81_RS10985 (MKR81_10985) ybgE 2379808..2380110 (-) 303 WP_012127446.1 cyd operon protein YbgE -
  MKR81_RS10990 (MKR81_10990) cydX 2380103..2380210 (-) 108 WP_000270284.1 cytochrome bd-I oxidase subunit CydX -
  MKR81_RS10995 (MKR81_10995) cydB 2380223..2381359 (-) 1137 WP_038889166.1 cytochrome d ubiquinol oxidase subunit II -
  MKR81_RS11000 (MKR81_11000) cydA 2381377..2382963 (-) 1587 WP_038889167.1 cytochrome ubiquinol oxidase subunit I -
  MKR81_RS11005 (MKR81_11005) ruvB 2383425..2384429 (-) 1005 WP_009698277.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  MKR81_RS11010 (MKR81_11010) ruvA 2384451..2385065 (-) 615 WP_240304556.1 Holliday junction branch migration protein RuvA Machinery gene
  MKR81_RS11015 (MKR81_11015) - 2385144..2386595 (-) 1452 WP_240304557.1 methyl-accepting chemotaxis protein -
  MKR81_RS11020 (MKR81_11020) ruvC 2386718..2387239 (-) 522 WP_009842728.1 crossover junction endodeoxyribonuclease RuvC -
  MKR81_RS11025 (MKR81_11025) aspS 2387636..2389414 (-) 1779 WP_005426152.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 37263.60 Da        Isoelectric Point: 4.6668

>NTDB_id=567801 MKR81_RS11005 WP_009698277.1 2383425..2384429(-) (ruvB) [Vibrio campbellii strain IFL1]
MIEADRLIAPENPSFRDEDVIDRAIRPKKLADYQGQDHVRDQMEIFIKAAQLRNEALDHLLIFGPPGLGKTTLANIVANE
MEVNIRTTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRLSPMVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLI
GATTRAGSLTSPLRDRFGITQRLEYYKVKDLQDIVQRSADCLGLSMESEGALEVARRARGTPRIANRLLRRVRDYAEVKG
NGHICADTADKALNMLDVDAEGFDYMDRKLLLAIMEKFGGGPVGLDNMAAAIGEEKDTIEDVLEPYLIQQGYLQRTPRGR
IATDRAYLHFGIEK

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=567801 MKR81_RS11005 WP_009698277.1 2383425..2384429(-) (ruvB) [Vibrio campbellii strain IFL1]
ATGATTGAAGCCGATCGTTTAATCGCGCCAGAGAATCCTTCGTTTCGTGATGAAGATGTCATCGACCGTGCGATTCGTCC
TAAGAAGCTGGCGGATTACCAAGGTCAGGATCACGTGCGTGATCAGATGGAGATTTTCATCAAAGCCGCTCAATTGCGAA
ATGAAGCGCTCGACCACCTTTTGATTTTTGGTCCTCCAGGTTTGGGTAAAACCACGCTTGCGAACATCGTTGCCAATGAG
ATGGAAGTGAACATTCGTACCACTTCAGGCCCTGTACTTGAGAAAGCAGGGGACTTAGCGGCGCTGTTGACCAACTTAGA
AGAAAACGATGTGTTGTTCATTGATGAGATCCACCGCTTAAGCCCGATGGTTGAAGAGGTGTTGTATCCAGCGATGGAAG
ACTACCAGTTAGACATTATGATTGGTGAAGGTCCGGCGGCGCGCTCTATTAAAATTGATTTACCACCTTTCACTTTGATT
GGCGCAACGACGCGTGCAGGCTCTCTGACATCACCATTGCGTGACCGTTTTGGTATTACTCAGCGTCTTGAATACTACAA
AGTGAAAGACCTGCAAGATATCGTTCAGCGTAGTGCTGACTGTTTGGGTTTGTCTATGGAGTCGGAAGGGGCGTTAGAAG
TTGCTCGCCGTGCTCGTGGCACGCCACGTATTGCTAACCGATTGCTACGCCGAGTTCGTGACTATGCGGAAGTAAAAGGC
AACGGTCACATTTGTGCTGATACCGCAGACAAAGCATTGAACATGCTTGATGTCGATGCCGAAGGTTTCGATTATATGGA
CCGTAAGCTGCTGTTAGCGATCATGGAGAAGTTTGGTGGTGGACCTGTTGGTTTGGACAACATGGCAGCGGCGATCGGTG
AAGAGAAAGACACCATCGAAGACGTTCTTGAACCATATCTAATCCAACAAGGCTATTTGCAACGCACTCCGCGTGGTAGA
ATTGCCACCGATCGTGCTTATTTGCATTTCGGAATTGAAAAGTAA

Domains

Predicted by InterProScan.

RuvB C-terminal winged helix domain (WHD_RuvB)

(261-330)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(25-183)

RuvB AAA lid domain (AAA_lid_4)

(186-259)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB K5U0H4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Bacillus subtilis subsp. subtilis str. 168

60.486

98.503

0.596
  ruvB Streptococcus pneumoniae TIGR4

59.133

96.707

0.572
  ruvB Streptococcus pneumoniae R6

59.133

96.707

0.572
  ruvB Streptococcus pneumoniae D39

59.133

96.707

0.572
  ruvB Synechocystis sp. PCC 6803

55.663

92.515

0.515
  ruvB Helicobacter pylori 26695

54.276

91.018

0.494