Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   MKR81_RS11010 Genome accession   NZ_CP092682
Coordinates   2384451..2385065 (-) Length   204 a.a.
NCBI ID   WP_240304556.1    Uniprot ID   -
Organism   Vibrio campbellii strain IFL1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2379451..2390065
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKR81_RS10985 (MKR81_10985) ybgE 2379808..2380110 (-) 303 WP_012127446.1 cyd operon protein YbgE -
  MKR81_RS10990 (MKR81_10990) cydX 2380103..2380210 (-) 108 WP_000270284.1 cytochrome bd-I oxidase subunit CydX -
  MKR81_RS10995 (MKR81_10995) cydB 2380223..2381359 (-) 1137 WP_038889166.1 cytochrome d ubiquinol oxidase subunit II -
  MKR81_RS11000 (MKR81_11000) cydA 2381377..2382963 (-) 1587 WP_038889167.1 cytochrome ubiquinol oxidase subunit I -
  MKR81_RS11005 (MKR81_11005) ruvB 2383425..2384429 (-) 1005 WP_009698277.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  MKR81_RS11010 (MKR81_11010) ruvA 2384451..2385065 (-) 615 WP_240304556.1 Holliday junction branch migration protein RuvA Machinery gene
  MKR81_RS11015 (MKR81_11015) - 2385144..2386595 (-) 1452 WP_240304557.1 methyl-accepting chemotaxis protein -
  MKR81_RS11020 (MKR81_11020) ruvC 2386718..2387239 (-) 522 WP_009842728.1 crossover junction endodeoxyribonuclease RuvC -
  MKR81_RS11025 (MKR81_11025) aspS 2387636..2389414 (-) 1779 WP_005426152.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 22149.58 Da        Isoelectric Point: 4.8115

>NTDB_id=567802 MKR81_RS11010 WP_240304556.1 2384451..2385065(-) (ruvA) [Vibrio campbellii strain IFL1]
MIGRLRGTLLEKQPPEVLIEVNGIGYEVQMPMSCFYELPNVGEEAIIYTHFVVREDAQLLYGFNTVKERALFREVIKANG
VGPKLGLGILSGMTASQFVSCVEREDISTLVKLPGVGKKTAERLVVEMKDRLKGWGAGDLFTPFTDAAPADDGSAASNNA
EEEAISALLALGYKPTQASKVVSQIAKPDMTSEQLIREALKSMV

Nucleotide


Download         Length: 615 bp        

>NTDB_id=567802 MKR81_RS11010 WP_240304556.1 2384451..2385065(-) (ruvA) [Vibrio campbellii strain IFL1]
GTGATTGGACGTCTTCGCGGCACTCTGCTTGAAAAGCAACCACCTGAAGTTTTAATTGAAGTTAATGGCATTGGTTATGA
AGTTCAGATGCCAATGAGCTGTTTCTACGAACTGCCAAACGTCGGTGAAGAAGCCATTATTTATACTCACTTTGTTGTGC
GTGAAGACGCGCAATTGCTTTACGGTTTCAACACAGTCAAAGAGCGTGCACTTTTCCGTGAAGTGATCAAAGCGAACGGT
GTTGGTCCTAAGCTAGGTCTGGGTATCCTTTCTGGTATGACAGCGAGCCAATTCGTTTCTTGCGTTGAGCGTGAAGACAT
TTCAACGCTTGTGAAGCTGCCTGGTGTTGGTAAGAAGACAGCTGAACGCCTAGTCGTTGAAATGAAAGACCGCCTGAAAG
GGTGGGGTGCTGGCGATCTATTTACTCCGTTTACTGATGCAGCACCTGCGGACGATGGCTCTGCGGCTTCTAACAACGCA
GAAGAAGAGGCAATCAGTGCGCTTCTAGCTCTAGGTTACAAGCCGACTCAAGCGTCGAAAGTGGTTTCTCAGATCGCTAA
ACCGGATATGACCAGTGAGCAACTGATCCGTGAAGCACTAAAATCAATGGTGTAA

Domains

Predicted by InterProScan.

RuvA, C-terminal domain (RuvA_C)

(160-203)

Helix-hairpin-helix domain (HHH_5)

(72-130)

RuvA N terminal domain (RuvA_N)

(1-62)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae R6

36.275

100

0.363
  ruvA Streptococcus pneumoniae D39

36.275

100

0.363