Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AZKH_RS21905 Genome accession   NC_020516
Coordinates   4870634..4872133 (-) Length   499 a.a.
NCBI ID   WP_015437996.1    Uniprot ID   H0Q098
Organism   Azoarcus sp. KH32C     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 4865634..4877133
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AZKH_RS21885 (AZKH_4415) - 4865960..4866343 (-) 384 WP_015437992.1 two-component system response regulator -
  AZKH_RS21890 (AZKH_4416) - 4866348..4866719 (-) 372 WP_015437993.1 response regulator -
  AZKH_RS21895 (AZKH_4417) - 4866716..4869259 (-) 2544 WP_015437994.1 response regulator -
  AZKH_RS21900 (AZKH_4418) - 4869633..4870523 (-) 891 WP_015437995.1 DUF72 domain-containing protein -
  AZKH_RS21905 (AZKH_4419) comM 4870634..4872133 (-) 1500 WP_015437996.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  AZKH_RS21910 (AZKH_4420) - 4872232..4872486 (-) 255 WP_015437997.1 accessory factor UbiK family protein -
  AZKH_RS21915 (AZKH_4421) - 4872809..4873570 (+) 762 WP_015437998.1 TorF family putative porin -
  AZKH_RS21920 (AZKH_4422) glnK 4873621..4873959 (+) 339 WP_015437999.1 P-II family nitrogen regulator -
  AZKH_RS21925 (AZKH_4423) - 4873975..4875435 (+) 1461 WP_015438000.1 ammonium transporter -
  AZKH_RS21930 (AZKH_4424) - 4875653..4876102 (+) 450 WP_015438001.1 rhodanese-like domain-containing protein -

Sequence

Protein


Download         Length: 499 a.a.        Molecular weight: 52781.34 Da        Isoelectric Point: 8.5243

>NTDB_id=56732 AZKH_RS21905 WP_015437996.1 4870634..4872133(-) (comM) [Azoarcus sp. KH32C]
MSLALIRTRALAGLGAPEVTVEVHLANGLPAFSLVGLPDTEVREARDRVRAAIVTSQFEFPQRRITVNLAPADLPKEGGR
FDLPIALGILVASGQVEAAALARHEFVGELSLDGSLRPVRGALSMALANARAGRALVLPAVNADEAALATGAEILPAASL
LAVCAHLNGHSKLEPHPAPQVAGATDADADLADVKGQLQARRALEVAAAGQHSLLMFGPPGTGKSMLARRLPGLLPPMDD
AEALESAAIQSVEGGFDASRWRRRAYRAPHHSASAPALVGGGSTPRPGEISLAHHGVLFLDELPEFNRRVLEALREPLET
GVVTVSRARQRAEFPARFQLVAAMNPCPCGHAGNPRGQCRCTPDQVARYRGRLSGPLLDRMDITIEVPLLDHAELVAQPA
GEASGTVRERVGRAWAIQRERQGVPNSQLATGRVDALCAPDSAGQGLLDQAVRRLNLSARGYHRILKVARTIADLAGAER
VGASHLAEAIQYRRGLDAR

Nucleotide


Download         Length: 1500 bp        

>NTDB_id=56732 AZKH_RS21905 WP_015437996.1 4870634..4872133(-) (comM) [Azoarcus sp. KH32C]
ATGTCGCTCGCCCTGATCCGTACCCGGGCGCTCGCCGGTCTCGGCGCGCCCGAGGTCACGGTCGAAGTCCATCTCGCCAA
CGGTCTGCCCGCATTCAGCCTGGTCGGGCTCCCCGATACCGAGGTGCGCGAGGCACGCGACCGTGTGCGCGCCGCGATCG
TCACGTCGCAGTTCGAATTCCCACAACGCCGCATCACCGTGAATTTGGCGCCGGCCGACCTGCCCAAGGAGGGCGGACGC
TTCGACCTGCCGATTGCGCTGGGCATCCTCGTCGCGTCGGGCCAGGTCGAGGCGGCGGCGCTCGCGCGCCACGAGTTCGT
CGGCGAACTGTCGCTCGACGGCAGCCTGCGCCCGGTGCGCGGCGCGCTGTCGATGGCGCTCGCGAACGCGCGTGCGGGCC
GTGCGCTGGTCCTGCCGGCCGTCAATGCCGACGAGGCGGCGCTCGCGACCGGCGCCGAGATCCTGCCCGCCGCGAGCCTT
CTCGCGGTGTGCGCACATCTCAATGGCCACAGCAAGCTGGAACCGCATCCCGCGCCGCAGGTGGCGGGCGCGACGGATGC
CGATGCCGATCTCGCCGACGTCAAGGGACAGCTGCAGGCGCGCCGGGCGCTCGAAGTCGCGGCGGCAGGACAGCATTCAT
TATTGATGTTCGGCCCGCCGGGCACCGGCAAGTCGATGCTCGCGCGTCGCCTGCCGGGCCTGCTGCCGCCGATGGACGAT
GCCGAGGCGCTCGAAAGCGCGGCGATCCAGTCCGTCGAGGGGGGCTTCGACGCCTCGCGCTGGCGCCGTCGTGCGTATCG
GGCTCCGCATCACTCGGCGTCGGCGCCGGCGCTGGTCGGCGGCGGTTCGACGCCGCGGCCCGGCGAAATCAGTCTCGCGC
ACCATGGCGTCCTGTTCCTCGACGAGCTGCCGGAGTTCAATCGCCGCGTGCTCGAGGCGCTGCGCGAACCGCTGGAGACC
GGCGTCGTGACGGTGTCGCGTGCGCGCCAGCGGGCGGAATTCCCGGCGCGCTTCCAGCTCGTCGCGGCGATGAACCCCTG
CCCCTGCGGTCACGCGGGTAATCCGCGCGGGCAGTGCCGCTGTACGCCGGATCAGGTGGCGCGCTACCGCGGGCGGCTCT
CCGGGCCCTTGCTCGACCGCATGGACATCACGATCGAAGTGCCGCTGCTCGATCATGCGGAGCTCGTCGCGCAACCCGCC
GGCGAAGCGAGCGGGACGGTCCGCGAACGCGTCGGGCGCGCGTGGGCGATCCAGCGCGAACGCCAGGGCGTGCCGAACAG
CCAGCTCGCCACGGGCCGCGTCGATGCGTTGTGCGCGCCCGACAGCGCCGGGCAGGGCTTGCTCGACCAGGCGGTCCGGC
GGCTGAACCTGTCGGCGCGCGGGTACCACCGCATTCTCAAGGTCGCGCGGACGATTGCGGACCTTGCCGGCGCCGAGCGC
GTCGGGGCGTCGCACCTCGCGGAGGCGATCCAGTATCGCCGCGGGCTCGACGCACGCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-393)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB H0Q098

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

53.307

100

0.533
  comM Vibrio campbellii strain DS40M4

53.629

99.399

0.533
  comM Vibrio cholerae strain A1552

53.333

99.198

0.529
  comM Glaesserella parasuis strain SC1401

51.793

100

0.521
  comM Legionella pneumophila str. Paris

49.499

100

0.495
  comM Legionella pneumophila strain ERS1305867

49.499

100

0.495
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.356

100

0.449

Multiple sequence alignment