Detailed information NTG0056688

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: WQG_RS04710
• Genome accession: NC_020515
• Coordinates: 999866..1001062 (-)
• Length: 398 a.a.
• NCBI ID: WP_015432349.1
• Uniprot ID: -
• Organism: Bibersteinia trehalosi USDA-ARS-USMARC-192
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 994866..1006062

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
WQG_RS04675 (WQG_9270)	-	995032..995550 (+)	519	WP_015432342.1	PTS sugar transporter subunit IIA	-
WQG_RS04680 (WQG_9280)	rapZ	995550..996413 (+)	864	WP_015432343.1	RNase adapter RapZ	-
WQG_RS04685 (WQG_9290)	-	996415..997599 (+)	1185	WP_015432344.1	FAD-dependent monooxygenase	-
WQG_RS04690 (WQG_9300)	-	997734..998288 (+)	555	WP_015432345.1	hypothetical protein	-
WQG_RS04695 (WQG_9310)	yacG	998348..998554 (-)	207	WP_015432346.1	DNA gyrase inhibitor YacG	-
WQG_RS04700 (WQG_9320)	coaE	998551..999174 (-)	624	WP_015432347.1	dephospho-CoA kinase	-
WQG_RS04705 (WQG_9330)	-	999204..999869 (-)	666	WP_025328967.1	A24 family peptidase	-
WQG_RS04710 (WQG_9340)	pilC	999866..1001062 (-)	1197	WP_015432349.1	type II secretion system F family protein	Machinery gene
WQG_RS04715 (WQG_9350)	pilB	1001055..1002452 (-)	1398	WP_015432350.1	GspE/PulE family protein	Machinery gene
WQG_RS04720 (WQG_9360)	pilA	1002510..1002956 (-)	447	WP_025267127.1	prepilin peptidase-dependent pilin	Machinery gene
WQG_RS04725 (WQG_9370)	radA	1003131..1004510 (+)	1380	WP_015432352.1	DNA repair protein RadA	Machinery gene

Sequence

Protein

• Length: 398 a.a.
• Molecular weight: 46047.54 Da
• Isoelectric Point: 9.8201

>NTDB_id=56688 WQG_RS04710 WP_015432349.1 999866..1001062(-) (pilC) [Bibersteinia trehalosi USDA-ARS-USMARC-192]
MFNVYEFRWQARDRFGQKQSGKQLAESTQQLEQRLQQQGFSHIRIQRNFVLPQQPKSSEITQFLQQFALLTNATIPLKLS
LTMLLENCQNSKIYLWLRAVIQQLENGFSLAQSFENTGKFLTQQEIQLIKIGEQSGELNKILSNISQNRQRSEQLNKKLK
KILFYPIMILFISISLSVLLLLFIVPKFAELYDAKNRELPLMTKILFYLSDFLQHHFIALLISIISLSLLLYFISKKTQI
LTRLKAQILSILPLFKQIHLQARLVFFCYNCGLMLQAHLRLDSVLDSFISAKNNDPILSPELSKTLARLKQGYRLSDCLP
AHLFPNEVLQMIKVGEQSGKLAEMLLQVSEIYRQKLEYQIDLLSQMLEPLLMLVIGFIVGTILIGLYLPIFDMGAMIE

Nucleotide

• Length: 1197 bp

>NTDB_id=56688 WQG_RS04710 WP_015432349.1 999866..1001062(-) (pilC) [Bibersteinia trehalosi USDA-ARS-USMARC-192]
ATGTTTAACGTTTATGAATTTCGTTGGCAAGCACGTGATCGTTTTGGGCAAAAACAATCTGGTAAACAGCTTGCTGAAAG
CACGCAACAACTTGAGCAACGCTTGCAACAGCAGGGCTTCAGTCATATTCGCATTCAGCGGAATTTTGTTTTACCACAAC
AACCAAAATCAAGTGAAATTACACAATTTTTACAGCAATTTGCTCTGCTGACTAACGCAACTATTCCGCTAAAACTCAGC
TTAACAATGCTGTTAGAAAACTGCCAAAACAGCAAAATATATTTGTGGCTAAGAGCTGTTATTCAGCAACTTGAAAATGG
CTTCTCTCTTGCTCAATCCTTTGAAAATACGGGGAAATTTCTTACACAGCAAGAAATACAGCTCATTAAAATTGGCGAAC
AAAGTGGCGAGCTCAATAAGATTTTAAGCAATATCTCACAAAATCGTCAACGTAGTGAACAACTCAATAAAAAACTCAAA
AAAATTTTATTTTATCCCATCATGATCTTGTTCATTTCCATTAGCTTATCTGTACTTCTTCTATTATTTATCGTTCCTAA
ATTCGCAGAGCTTTATGATGCTAAAAACAGAGAGCTACCGTTAATGACAAAGATTCTCTTCTACTTGTCAGATTTTTTAC
AACACCACTTTATTGCACTACTCATTTCCATTATAAGTTTAAGCTTGTTACTATATTTTATTAGTAAAAAAACTCAAATT
CTTACCCGCTTGAAAGCTCAGATTCTTTCTATTCTACCACTGTTTAAGCAAATCCATTTACAGGCTCGTTTAGTCTTTTT
CTGCTACAACTGTGGATTAATGCTGCAAGCACACTTACGTCTTGACAGCGTACTTGATAGTTTTATCTCAGCCAAAAACA
ACGATCCTATTTTATCCCCCGAACTTTCTAAAACATTAGCACGCTTAAAGCAAGGCTATAGGCTCTCTGACTGCTTACCT
GCCCATTTATTTCCAAATGAAGTATTACAAATGATAAAGGTAGGTGAACAAAGTGGGAAACTGGCCGAGATGTTATTACA
AGTGAGTGAAATTTATCGCCAAAAATTAGAATATCAAATTGACTTACTTTCACAAATGCTAGAGCCGCTGTTAATGCTCG
TGATAGGATTCATTGTCGGTACTATTTTAATCGGTTTATATCTACCTATTTTTGATATGGGAGCAATGATTGAATGA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (267-389)

• Type II secretion system (T2SS), protein F (T2SSF) (63-186)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Glaesserella parasuis strain SC1401	58.04	100	0.58
pilC	Haemophilus influenzae Rd KW20	43.392	100	0.437
pilC	Haemophilus influenzae 86-028NP	42.643	100	0.43