Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   SAFDA_RS03740 Genome accession   NZ_AP014942
Coordinates   775745..776827 (+) Length   360 a.a.
NCBI ID   WP_042727548.1    Uniprot ID   -
Organism   Staphylococcus aureus strain FDA209P     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 770745..781827
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SAFDA_RS03720 (SAFDA_0690) gdpS 771115..772185 (-) 1071 WP_000460983.1 GGDEF domain-containing protein GdpS -
  SAFDA_RS03725 (SAFDA_0691) - 772503..773558 (+) 1056 WP_000258151.1 glycosyltransferase family 4 protein -
  SAFDA_RS03730 (SAFDA_0692) - 773730..774371 (-) 642 WP_000192957.1 YigZ family protein -
  SAFDA_RS03735 (SAFDA_0693) fakB1 774515..775381 (+) 867 WP_000686344.1 fatty acid kinase binding subunit FakB1 -
  SAFDA_RS03740 (SAFDA_0694) comFA 775745..776827 (+) 1083 WP_042727548.1 DEAD/DEAH box helicase Machinery gene
  SAFDA_RS03745 (SAFDA_0695) - 776820..777494 (+) 675 WP_042727547.1 ComF family protein -
  SAFDA_RS03750 (SAFDA_0696) hpf 777555..778127 (+) 573 WP_000617735.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  SAFDA_RS03755 (SAFDA_0697) secA 778541..781072 (+) 2532 WP_000506531.1 preprotein translocase subunit SecA -
  SAFDA_RS03760 - 781114..781218 (+) 105 WP_001790092.1 hypothetical protein -

Sequence

Protein


Download         Length: 360 a.a.        Molecular weight: 42111.65 Da        Isoelectric Point: 9.8307

>NTDB_id=56691 SAFDA_RS03740 WP_042727548.1 775745..776827(+) (comFA) [Staphylococcus aureus strain FDA209P]
MDNVTRYKITESSQSSSQAYYHLSFELSEQQSYASEHIVRAIRKRQTILLYAVTGAGKTEMMFQGIQYARIQGDNIAIVS
PRVDVVVEISKRIKDAFLNEDIDILHQQSRQQFEGHFVVCTVHQLYRFKQHFDTIFIDEVDAFPLSMDKNLQQALKSSSK
VEHATIYMTATPPKQLLSEIPHENIIKLPARFHKKSLPVPKYRYFKLNNKKIQKMLYRILQDQINNQRYTLVFFNNIETM
IKTFSVYKQKITKLTYVHSEDVFRFEKVEQLRNGHFDVIFTTTIIERGFTMANLDVVVIDAHQYTQEALIQIAGRVGRKL
ECPTGKVLFFHEGVSMNMIQAKKEIQRMNKLALKRGWIDE

Nucleotide


Download         Length: 1083 bp        

>NTDB_id=56691 SAFDA_RS03740 WP_042727548.1 775745..776827(+) (comFA) [Staphylococcus aureus strain FDA209P]
ATGGATAATGTAACAAGATATAAAATAACAGAGAGTTCGCAAAGTTCATCACAAGCATATTATCATCTCTCATTTGAATT
GTCGGAACAGCAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAAAGAGACAAACGATTTTGTTATATGCCGTAA
CAGGTGCAGGTAAGACAGAAATGATGTTTCAAGGCATTCAATATGCAAGAATACAGGGAGATAATATAGCTATTGTGTCA
CCGCGTGTAGATGTTGTTGTAGAAATTAGTAAACGTATTAAAGACGCATTTCTTAATGAAGATATAGACATACTACACCA
GCAATCAAGACAACAATTTGAAGGGCATTTTGTTGTATGCACAGTGCATCAACTTTACCGATTCAAACAGCACTTTGATA
CTATTTTTATTGATGAAGTCGATGCCTTTCCTTTATCAATGGATAAAAATCTACAACAAGCATTGAAGTCATCTTCTAAA
GTTGAACATGCAACAATTTATATGACAGCAACACCACCGAAACAACTTCTGTCAGAGATTCCCCACGAAAATATAATTAA
ATTGCCAGCTCGCTTTCATAAAAAATCACTTCCAGTTCCTAAATATCGTTATTTCAAACTTAATAATAAGAAGATTCAGA
AAATGTTATACCGAATTTTACAAGATCAAATTAATAATCAACGTTATACACTGGTGTTTTTTAACAATATAGAAACAATG
ATTAAAACATTTTCGGTTTATAAGCAGAAAATTACTAAATTAACATACGTCCATAGCGAGGATGTTTTTCGCTTTGAAAA
AGTTGAACAATTAAGGAATGGACATTTCGATGTCATTTTTACTACGACAATAATAGAACGTGGATTTACAATGGCAAATT
TGGATGTTGTTGTTATCGATGCACATCAATATACTCAAGAGGCTTTAATACAAATTGCTGGACGTGTTGGACGAAAATTA
GAATGTCCTACTGGAAAAGTATTGTTTTTCCATGAAGGAGTAAGTATGAATATGATTCAAGCTAAAAAAGAGATTCAAAG
GATGAACAAATTAGCATTAAAAAGAGGTTGGATTGATGAATAA

Domains

Predicted by InterProScan.

Type III restriction enzyme, res subunit (ResIII)

(25-173)

Helicase conserved C-terminal domain (Helicase_C)

(215-318)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

38.643

94.167

0.364

Multiple sequence alignment