Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | WQG_RS04720 | Genome accession | NC_020515 |
| Coordinates | 1002510..1002956 (-) | Length | 148 a.a. |
| NCBI ID | WP_025267127.1 | Uniprot ID | A0A4V7IAF9 |
| Organism | Bibersteinia trehalosi USDA-ARS-USMARC-192 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 997510..1007956
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| WQG_RS04690 (WQG_9300) | - | 997734..998288 (+) | 555 | WP_015432345.1 | hypothetical protein | - |
| WQG_RS04695 (WQG_9310) | yacG | 998348..998554 (-) | 207 | WP_015432346.1 | DNA gyrase inhibitor YacG | - |
| WQG_RS04700 (WQG_9320) | coaE | 998551..999174 (-) | 624 | WP_015432347.1 | dephospho-CoA kinase | - |
| WQG_RS04705 (WQG_9330) | - | 999204..999869 (-) | 666 | WP_025328967.1 | A24 family peptidase | - |
| WQG_RS04710 (WQG_9340) | pilC | 999866..1001062 (-) | 1197 | WP_015432349.1 | type II secretion system F family protein | Machinery gene |
| WQG_RS04715 (WQG_9350) | pilB | 1001055..1002452 (-) | 1398 | WP_015432350.1 | GspE/PulE family protein | Machinery gene |
| WQG_RS04720 (WQG_9360) | pilA | 1002510..1002956 (-) | 447 | WP_025267127.1 | prepilin peptidase-dependent pilin | Machinery gene |
| WQG_RS04725 (WQG_9370) | radA | 1003131..1004510 (+) | 1380 | WP_015432352.1 | DNA repair protein RadA | Machinery gene |
| WQG_RS04730 (WQG_9380) | - | 1004601..1006145 (-) | 1545 | WP_015432353.1 | Na+/H+ antiporter NhaC family protein | - |
| WQG_RS04735 (WQG_9400) | - | 1006650..1007051 (+) | 402 | WP_015432355.1 | H-NS family nucleoid-associated regulatory protein | - |
| WQG_RS04740 (WQG_9410) | rnhA | 1007394..1007852 (+) | 459 | WP_015432356.1 | ribonuclease HI | - |
Sequence
Protein
Download Length: 148 a.a. Molecular weight: 15806.99 Da Isoelectric Point: 7.5807
>NTDB_id=56690 WQG_RS04720 WP_025267127.1 1002510..1002956(-) (pilA) [Bibersteinia trehalosi USDA-ARS-USMARC-192]
MKISNFRPLQKGFTLIELMIVIAIIAILATIAIPSYTNYTQKAALSEMLRASASYKSDVEICIYNTGATTNCSAGSNGIQ
AAKTESSDTKYLKSVSVTNGIINVEGKGSLDGYSYTMTPKFANNNITWSVNCTGADTGLFPANFCSSE
MKISNFRPLQKGFTLIELMIVIAIIAILATIAIPSYTNYTQKAALSEMLRASASYKSDVEICIYNTGATTNCSAGSNGIQ
AAKTESSDTKYLKSVSVTNGIINVEGKGSLDGYSYTMTPKFANNNITWSVNCTGADTGLFPANFCSSE
Nucleotide
Download Length: 447 bp
>NTDB_id=56690 WQG_RS04720 WP_025267127.1 1002510..1002956(-) (pilA) [Bibersteinia trehalosi USDA-ARS-USMARC-192]
ATGAAAATTTCTAACTTTCGCCCACTTCAAAAGGGCTTTACTTTAATTGAACTCATGATCGTGATTGCGATCATTGCAAT
TCTCGCTACTATCGCGATTCCATCTTATACCAACTATACTCAAAAAGCGGCTCTCTCTGAAATGTTACGTGCTTCTGCCT
CTTACAAATCAGATGTGGAAATTTGTATTTATAACACAGGGGCTACTACCAACTGCTCCGCAGGATCAAATGGAATTCAA
GCTGCGAAAACAGAGAGTAGTGATACAAAATATTTGAAATCAGTCTCTGTCACTAATGGCATTATTAATGTTGAAGGTAA
AGGCAGCCTTGATGGATATAGCTATACCATGACACCTAAATTTGCTAACAACAATATTACTTGGTCAGTCAATTGCACTG
GGGCAGACACAGGCTTATTCCCTGCTAATTTCTGTAGTTCGGAATAA
ATGAAAATTTCTAACTTTCGCCCACTTCAAAAGGGCTTTACTTTAATTGAACTCATGATCGTGATTGCGATCATTGCAAT
TCTCGCTACTATCGCGATTCCATCTTATACCAACTATACTCAAAAAGCGGCTCTCTCTGAAATGTTACGTGCTTCTGCCT
CTTACAAATCAGATGTGGAAATTTGTATTTATAACACAGGGGCTACTACCAACTGCTCCGCAGGATCAAATGGAATTCAA
GCTGCGAAAACAGAGAGTAGTGATACAAAATATTTGAAATCAGTCTCTGTCACTAATGGCATTATTAATGTTGAAGGTAA
AGGCAGCCTTGATGGATATAGCTATACCATGACACCTAAATTTGCTAACAACAATATTACTTGGTCAGTCAATTGCACTG
GGGCAGACACAGGCTTATTCCCTGCTAATTTCTGTAGTTCGGAATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Glaesserella parasuis strain SC1401 |
71.141 |
100 |
0.716 |
| pilA | Haemophilus influenzae 86-028NP |
57.432 |
100 |
0.574 |
| pilA | Haemophilus influenzae Rd KW20 |
56.081 |
100 |
0.561 |
| comP | Acinetobacter baylyi ADP1 |
44.094 |
85.811 |
0.378 |
| pilA | Vibrio campbellii strain DS40M4 |
38.028 |
95.946 |
0.365 |