Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   SITYG_RS09730 Genome accession   NZ_AP014880
Coordinates   1901481..1902071 (-) Length   196 a.a.
NCBI ID   WP_096363250.1    Uniprot ID   -
Organism   Streptococcus intermedius strain TYG1620     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1896481..1907071
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SITYG_RS10770 (SITYG_19100) - 1897441..1897575 (-) 135 WP_269457668.1 hypothetical protein -
  SITYG_RS09705 (SITYG_19110) spx 1897657..1898055 (-) 399 WP_003026638.1 transcriptional regulator Spx -
  SITYG_RS09710 (SITYG_19120) recA 1898141..1899286 (-) 1146 WP_003077215.1 recombinase RecA Machinery gene
  SITYG_RS09715 (SITYG_19130) cinA 1899335..1900603 (-) 1269 WP_096363248.1 competence/damage-inducible protein A Machinery gene
  SITYG_RS09720 (SITYG_19140) - 1900739..1900912 (-) 174 Protein_1875 CPBP family intramembrane glutamate endopeptidase -
  SITYG_RS09725 (SITYG_19150) - 1900917..1901471 (-) 555 WP_096363249.1 DNA-3-methyladenine glycosylase I -
  SITYG_RS09730 (SITYG_19160) ruvA 1901481..1902071 (-) 591 WP_096363250.1 Holliday junction branch migration protein RuvA Machinery gene
  SITYG_RS09735 (SITYG_19170) - 1902241..1902747 (+) 507 WP_096363251.1 helix-turn-helix domain-containing protein -
  SITYG_RS09740 (SITYG_19180) - 1902731..1903240 (+) 510 WP_162287173.1 RDD family protein -
  SITYG_RS09745 (SITYG_19190) hexB 1903386..1905332 (-) 1947 WP_021003321.1 DNA mismatch repair endonuclease MutL Machinery gene
  SITYG_RS09750 (SITYG_19200) brsR 1905574..1906014 (+) 441 WP_041823295.1 LytTR family DNA-binding domain-containing protein Regulator
  SITYG_RS09755 (SITYG_19210) - 1906011..1906469 (+) 459 WP_020999243.1 DUF3021 domain-containing protein -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 21606.99 Da        Isoelectric Point: 5.6978

>NTDB_id=56578 SITYG_RS09730 WP_096363250.1 1901481..1902071(-) (ruvA) [Streptococcus intermedius strain TYG1620]
MYEYFKGIISKITAKYIVLEVNSIGYILHVANPYAYSGHLHQEAKVYVHQVVREDAELLYGFATEEEKQLFLSLISVSGI
GPVSALAIIAADDNAGLVQAIEQKNITYLTKFPKIGKKTAQQMVLDLEGKVVVADGPAESKAPVQTADNQELEEAMEAML
ALGYKASELKKIKKFFEGTTDTAENYIKSALKMLVK

Nucleotide


Download         Length: 591 bp        

>NTDB_id=56578 SITYG_RS09730 WP_096363250.1 1901481..1902071(-) (ruvA) [Streptococcus intermedius strain TYG1620]
ATGTACGAATATTTTAAAGGAATCATCAGTAAAATAACAGCCAAGTACATTGTATTGGAAGTCAACTCTATCGGCTATAT
TCTTCATGTGGCCAACCCCTATGCTTACTCAGGGCATCTTCACCAGGAAGCCAAGGTCTATGTGCACCAGGTGGTGAGAG
AAGATGCGGAGCTCCTGTACGGCTTTGCGACCGAGGAGGAGAAGCAACTCTTTCTCAGCTTGATTTCAGTCTCAGGTATT
GGCCCAGTGTCTGCCCTGGCTATCATTGCTGCAGATGATAATGCTGGCTTGGTACAAGCTATTGAGCAAAAAAACATCAC
CTACCTAACCAAGTTTCCTAAGATTGGTAAGAAAACAGCCCAGCAGATGGTGCTGGACTTGGAAGGAAAAGTAGTGGTGG
CGGATGGTCCGGCAGAAAGCAAGGCGCCCGTCCAAACGGCGGATAATCAAGAGCTGGAAGAAGCTATGGAAGCCATGTTG
GCATTGGGCTATAAAGCTTCTGAGCTCAAGAAAATCAAGAAATTCTTTGAAGGCACAACTGATACAGCTGAAAACTATAT
CAAGTCAGCTCTCAAGATGTTGGTGAAATAG

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

85.787

100

0.862
  ruvA Streptococcus pneumoniae R6

85.787

100

0.862
  ruvA Streptococcus pneumoniae D39

85.787

100

0.862
  ruvA Bacillus subtilis subsp. subtilis str. 168

42.647

100

0.444

Multiple sequence alignment