Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   LU695_RS01935 Genome accession   NZ_CP092500
Coordinates   399706..400830 (+) Length   374 a.a.
NCBI ID   WP_000228501.1    Uniprot ID   -
Organism   Escherichia coli strain A30     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 394706..405830
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LU695_RS01915 (LU695_01915) trkA 395372..396748 (-) 1377 WP_000691382.1 Trk system potassium transporter TrkA -
  LU695_RS01920 (LU695_01920) rsmB 396770..398059 (-) 1290 WP_000744779.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  LU695_RS01925 (LU695_01925) fmt 398105..399052 (-) 948 WP_000004454.1 methionyl-tRNA formyltransferase -
  LU695_RS01930 (LU695_01930) def 399067..399576 (-) 510 WP_000114984.1 peptide deformylase -
  LU695_RS01935 (LU695_01935) dprA 399706..400830 (+) 1125 WP_000228501.1 DNA-protecting protein DprA Machinery gene
  LU695_RS01940 (LU695_01940) smg 400802..401275 (+) 474 WP_000460672.1 DUF494 family protein Smg -
  LU695_RS01945 (LU695_01945) yrdD 401304..401846 (+) 543 WP_001129723.1 type I DNA topoisomerase -
  LU695_RS01950 (LU695_01950) tsaC 401851..402423 (+) 573 WP_001365384.1 L-threonylcarbamoyladenylate synthase type 1 TsaC -
  LU695_RS01955 (LU695_01955) aroE 402428..403246 (+) 819 WP_000451234.1 shikimate dehydrogenase -
  LU695_RS01960 (LU695_01960) yrdB 403243..403500 (+) 258 WP_001070563.1 DUF1488 domain-containing protein -
  LU695_RS01965 (LU695_01965) yrdA 403476..404030 (-) 555 WP_001286216.1 gamma carbonic anhydrase family protein -

Sequence

Protein


Download         Length: 374 a.a.        Molecular weight: 40951.87 Da        Isoelectric Point: 6.3837

>NTDB_id=565515 LU695_RS01935 WP_000228501.1 399706..400830(+) (dprA) [Escherichia coli strain A30]
MVDTDIWLRLMSISSLYGDDMVRIAHWLAKQSHIDAVGLQQTGLTLRQAQRFLSFPRKSIESSLCWLEQPNHHLIPADSE
FYPPQLLATTDYPGALFVEGELHALHSFQLAVVGSRAHSWYGERWGRLFCETLATRGVTITSGLARGIDGVAHKAALQVN
GVSIAVLGNGLNTIHPRRHARLATSLLEHGGALVSEFPLDVPPLAYNFPRRNRIISGLSKGVLVVEAALRSGSLVTARCA
LEQGREVFALPGPIGNPGSEGPHWLIKQGAILVTEPEEILENLQFGLHWLPDAPENSFYSPDQQDVALPFPELLANVGDE
VTPVDVVAERAGQPVPEVVTQLLELELAGWIAAVPGGYVRLRRACHVRRTNVFV

Nucleotide


Download         Length: 1125 bp        

>NTDB_id=565515 LU695_RS01935 WP_000228501.1 399706..400830(+) (dprA) [Escherichia coli strain A30]
ATGGTCGATACAGATATTTGGCTGCGTTTAATGAGCATCAGCAGCTTGTACGGCGATGATATGGTCCGTATAGCTCACTG
GCTGGCAAAACAGTCGCATATTGATGCGGTTGGATTGCAGCAAACAGGGCTTACATTGCGGCAGGCACAACGCTTTCTTT
CATTTCCGCGAAAGAGTATCGAAAGCTCACTTTGTTGGTTGGAGCAACCCAACCATCATTTAATCCCTGCGGACAGCGAA
TTTTATCCTCCTCAACTTCTGGCGACGACAGATTACCCCGGCGCACTGTTTGTTGAAGGAGAACTGCACGCGCTGCATTC
ATTTCAGCTTGCCGTAGTGGGGAGTCGGGCGCATTCATGGTATGGCGAGCGATGGGGACGATTATTTTGCGAAACTCTGG
CCACGCGTGGAGTGACAATTACGAGTGGACTGGCGCGTGGAATCGATGGTGTGGCGCATAAAGCGGCCTTACAGGTAAAT
GGCGTCAGCATTGCTGTATTGGGGAACGGACTTAATACCATTCATCCGCGCCGCCATGCCCGACTGGCTACCAGTTTGCT
TGAACATGGTGGGGCACTTGTCTCGGAATTTCCCCTCGATGTTCCACCCCTTGCTTACAATTTCCCACGAAGAAATCGCA
TTATCAGTGGTCTAAGTAAAGGTGTACTGGTGGTGGAAGCGGCTTTGCGCAGTGGTTCGTTGGTGACAGCACGTTGTGCG
CTTGAGCAGGGGCGTGAAGTTTTTGCCTTGCCAGGACCAATAGGGAATCCGGGAAGCGAAGGGCCTCACTGGTTAATAAA
ACAAGGTGCGATTCTTGTGACGGAACCGGAAGAAATTCTGGAAAACTTGCAATTTGGATTGCACTGGTTGCCAGACGCCC
CTGAAAATTCATTTTATTCACCAGATCAGCAAGACGTGGCATTGCCATTTCCTGAGCTCCTGGCTAACGTAGGAGATGAG
GTAACACCTGTTGACGTCGTCGCTGAACGTGCCGGCCAACCTGTGCCAGAGGTAGTTACTCAACTACTCGAACTGGAGTT
AGCAGGATGGATCGCAGCTGTACCCGGCGGCTATGTCCGATTGAGGAGGGCATGCCATGTTCGACGTACTAATGTATTTG
TTTGA

Domains

Predicted by InterProScan.

DprA winged helix domain (WHD_DprA)

(312-357)

DNA recombination-mediator protein A (DNA_processg_A)

(67-274)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

48.509

98.663

0.479
  dprA Vibrio cholerae O1 biovar El Tor strain E7946

44.652

100

0.447
  dprA Vibrio cholerae strain A1552

44.652

100

0.447
  dprA Haemophilus influenzae Rd KW20

45.104

90.107

0.406
  dprA Glaesserella parasuis strain SC1401

44.807

90.107

0.404
  dprA Legionella pneumophila strain ERS1305867

44.242

88.235

0.39