Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   KIJ47_RS16995 Genome accession   NZ_CP074584
Coordinates   3574485..3575015 (-) Length   176 a.a.
NCBI ID   WP_029740211.1    Uniprot ID   A0A263VT06
Organism   Enterobacter asburiae strain L1 delta-T1RM     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3569485..3580015
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KIJ47_RS16970 (KIJ47_16965) - 3570076..3570747 (-) 672 WP_029740209.1 glutathione S-transferase family protein -
  KIJ47_RS16975 (KIJ47_16970) soxR 3571040..3571498 (-) 459 WP_023310057.1 redox-sensitive transcriptional activator SoxR -
  KIJ47_RS16980 (KIJ47_16975) soxS 3571597..3571923 (+) 327 WP_013095071.1 superoxide response transcriptional regulator SoxS -
  KIJ47_RS16985 (KIJ47_16980) - 3571930..3573495 (-) 1566 WP_029740210.1 EAL domain-containing protein -
  KIJ47_RS16990 (KIJ47_16985) - 3574142..3574423 (+) 282 WP_008503385.1 YjcB family protein -
  KIJ47_RS16995 (KIJ47_16990) ssb 3574485..3575015 (-) 531 WP_029740211.1 single-stranded DNA-binding protein SSB1 Machinery gene
  KIJ47_RS17000 (KIJ47_16995) uvrA 3575266..3578088 (+) 2823 WP_029740212.1 excinuclease ABC subunit UvrA -
  KIJ47_RS17005 (KIJ47_17000) - 3578092..3578445 (-) 354 WP_023310053.1 MmcQ/YjbR family DNA-binding protein -
  KIJ47_RS17010 (KIJ47_17005) - 3578448..3578864 (-) 417 WP_029740213.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  KIJ47_RS17015 (KIJ47_17010) aphA 3578978..3579691 (-) 714 WP_029740214.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 18792.81 Da        Isoelectric Point: 5.2456

>NTDB_id=565455 KIJ47_RS16995 WP_029740211.1 3574485..3575015(-) (ssb) [Enterobacter asburiae strain L1 delta-T1RM]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQAGAEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQSQQQGGWGQPQQPQGGNQFSGGAQSRPQQQSAP
APSNEPPMDFDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=565455 KIJ47_RS16995 WP_029740211.1 3574485..3575015(-) (ssb) [Enterobacter asburiae strain L1 delta-T1RM]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATGCCGAGTGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGTGAGATGAAAGAGCAGACCG
AATGGCACCGTGTTGTGCTGTTTGGCAAACTGGCTGAAGTGGCCGGTGAGTATCTGCGTAAAGGTTCTCAGGTCTATATC
GAAGGCCAGCTGCGTACCCGCAAATGGACCGATCAGGCCGGCGCTGAGAAGTACACCACAGAAGTCGTGGTCAACGTGGG
CGGCACCATGCAGATGCTGGGTGGCCGTCAGGGCGGTGGTGCACCGGCAGGTGGCGGCCAGAGCCAGCAGCAGGGCGGTT
GGGGTCAGCCTCAGCAGCCGCAGGGCGGCAACCAGTTCAGCGGCGGCGCACAGTCTCGTCCGCAGCAGCAGTCTGCTCCG
GCGCCGTCTAACGAACCGCCAATGGATTTCGACGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A263VT06

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

75.556

100

0.773
  ssb Glaesserella parasuis strain SC1401

56.216

100

0.591
  ssb Neisseria meningitidis MC58

46.629

100

0.472
  ssb Neisseria gonorrhoeae MS11

46.629

100

0.472
  ssbA Bacillus subtilis subsp. subtilis str. 168

35.556

100

0.364