Detailed information NTG0565368

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: MKD48_RS05850
• Genome accession: NZ_CP092475
• Coordinates: 1115453..1116457 (+)
• Length: 334 a.a.
• NCBI ID: WP_001005767.1
• Uniprot ID: Q6GG63
• Organism: Staphylococcus aureus strain P5
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1110453..1121457

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MKD48_RS05815	mreD	1111129..1111659 (+)	531	WP_001259930.1	rod shape-determining protein MreD	-
MKD48_RS05820	rplU	1111895..1112203 (+)	309	WP_000457386.1	50S ribosomal protein L21	-
MKD48_RS05825	-	1112209..1112529 (+)	321	WP_000633692.1	ribosomal-processing cysteine protease Prp	-
MKD48_RS05830	rpmA	1112541..1112825 (+)	285	WP_000916187.1	50S ribosomal protein L27	-
MKD48_RS05835	obgE	1113045..1114337 (+)	1293	WP_000496100.1	GTPase ObgE	-
MKD48_RS05840	-	1114350..1114805 (+)	456	WP_000368899.1	ACT domain-containing protein	-
MKD48_RS05845	ruvA	1114819..1115421 (+)	603	WP_000271551.1	Holliday junction branch migration protein RuvA	Machinery gene
MKD48_RS05850	ruvB	1115453..1116457 (+)	1005	WP_001005767.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
MKD48_RS05855	queA	1116459..1117484 (+)	1026	WP_001008435.1	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	-
MKD48_RS05860	tgt	1117507..1118646 (+)	1140	WP_001112045.1	tRNA guanosine(34) transglycosylase Tgt	-
MKD48_RS05865	yajC	1118665..1118925 (+)	261	WP_001160682.1	preprotein translocase subunit YajC	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 37718.00 Da
• Isoelectric Point: 5.0865

>NTDB_id=565368 MKD48_RS05850 WP_001005767.1 1115453..1116457(+) (ruvB) [Staphylococcus aureus strain P5]
MNERMVDQSMHSEETDFELSLRPTRLRQYIGQNSIKSNLEVFIKAAKLRHEPLDHVLLFGPPGLGKTTLSNIIANEMEVN
IRTVSGPSLERPGDLAAILSGLQPGDVLFIDEIHRLSSVVEEVLYPAMEDFFLDIIIGKGDEARSIRIDLPPFTLVGATT
RAGSLTGPLRDRFGVHLRLEYYNESDLKEIIIRTAEVLGTGIDEESAIELAKRSRGTPRVANRLLKRVRDFQQVNEDEQI
YIETTKHALGLLQVDQHGLDYIDHKMMNCIIKQYNGGPVGLDTIAVTIGEERITIEDVYEPFLIQKGFLERTPRGRKATP
LAYEHFAKSNEERE

Nucleotide

• Length: 1005 bp

>NTDB_id=565368 MKD48_RS05850 WP_001005767.1 1115453..1116457(+) (ruvB) [Staphylococcus aureus strain P5]
ATGAATGAGCGTATGGTTGATCAATCAATGCATAGTGAAGAAACTGATTTCGAATTGTCGCTTAGACCTACGAGATTACG
ACAATATATTGGTCAAAATTCAATAAAAAGTAATTTAGAAGTATTTATTAAAGCGGCTAAACTTCGTCATGAACCATTAG
ATCATGTATTGCTTTTTGGCCCCCCTGGATTAGGTAAGACAACATTATCTAATATCATTGCCAATGAAATGGAAGTTAAT
ATACGTACAGTATCAGGGCCTTCATTAGAAAGACCTGGTGATTTGGCTGCAATTTTATCAGGACTTCAACCTGGAGATGT
TTTGTTTATTGATGAAATACACAGACTGAGTAGTGTTGTTGAAGAAGTGTTATACCCTGCAATGGAAGATTTCTTTTTAG
ATATTATCATTGGTAAAGGCGATGAGGCTAGAAGTATCCGTATCGACTTACCTCCATTCACTTTGGTAGGTGCAACAACG
CGAGCTGGCAGCTTAACAGGTCCACTAAGGGATCGATTTGGTGTGCACTTAAGATTAGAATATTATAATGAATCAGATTT
AAAAGAAATCATTATTAGAACAGCTGAGGTTTTAGGCACAGGTATTGATGAAGAAAGTGCCATTGAACTTGCTAAACGTT
CTAGAGGGACTCCAAGAGTAGCAAATCGACTATTGAAGCGGGTAAGAGACTTCCAGCAAGTGAATGAAGATGAACAAATA
TACATTGAAACAACGAAGCACGCATTAGGTTTACTTCAAGTTGATCAACACGGACTAGATTACATTGATCATAAAATGAT
GAACTGTATTATTAAGCAGTATAATGGTGGACCTGTTGGTTTAGATACGATTGCCGTAACAATTGGTGAAGAACGTATTA
CAATTGAGGACGTTTATGAGCCATTTCTTATTCAGAAAGGCTTTTTAGAACGTACGCCACGTGGCAGAAAAGCAACACCA
TTAGCTTATGAACATTTTGCAAAGTCGAATGAGGAGAGAGAATAA

Domains

Predicted by InterProScan.

• RuvB AAA lid domain (AAA_lid_4) (182-255)

• RuvB C-terminal winged helix domain (WHD_RuvB) (257-326)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (21-179)

3D structure

• AlphaFold DB: Q6GG63

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Bacillus subtilis subsp. subtilis str. 168	65.951	97.605	0.644
ruvB	Streptococcus pneumoniae TIGR4	58.182	98.802	0.575
ruvB	Streptococcus pneumoniae R6	57.879	98.802	0.572
ruvB	Streptococcus pneumoniae D39	57.879	98.802	0.572
ruvB	Helicobacter pylori 26695	56.481	97.006	0.548
ruvB	Synechocystis sp. PCC 6803	53.75	95.808	0.515