Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   MKD48_RS05845 Genome accession   NZ_CP092475
Coordinates   1114819..1115421 (+) Length   200 a.a.
NCBI ID   WP_000271551.1    Uniprot ID   -
Organism   Staphylococcus aureus strain P5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1109819..1120421
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKD48_RS05805 - 1109968..1110087 (+) 120 WP_000840602.1 hypothetical protein -
  MKD48_RS05810 mreC 1110287..1111129 (+) 843 WP_000911037.1 rod shape-determining protein MreC -
  MKD48_RS05815 mreD 1111129..1111659 (+) 531 WP_001259930.1 rod shape-determining protein MreD -
  MKD48_RS05820 rplU 1111895..1112203 (+) 309 WP_000457386.1 50S ribosomal protein L21 -
  MKD48_RS05825 - 1112209..1112529 (+) 321 WP_000633692.1 ribosomal-processing cysteine protease Prp -
  MKD48_RS05830 rpmA 1112541..1112825 (+) 285 WP_000916187.1 50S ribosomal protein L27 -
  MKD48_RS05835 obgE 1113045..1114337 (+) 1293 WP_000496100.1 GTPase ObgE -
  MKD48_RS05840 - 1114350..1114805 (+) 456 WP_000368899.1 ACT domain-containing protein -
  MKD48_RS05845 ruvA 1114819..1115421 (+) 603 WP_000271551.1 Holliday junction branch migration protein RuvA Machinery gene
  MKD48_RS05850 ruvB 1115453..1116457 (+) 1005 WP_001005767.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  MKD48_RS05855 queA 1116459..1117484 (+) 1026 WP_001008435.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  MKD48_RS05860 tgt 1117507..1118646 (+) 1140 WP_001112045.1 tRNA guanosine(34) transglycosylase Tgt -
  MKD48_RS05865 yajC 1118665..1118925 (+) 261 WP_001160682.1 preprotein translocase subunit YajC -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 22253.45 Da        Isoelectric Point: 5.7132

>NTDB_id=565367 MKD48_RS05845 WP_000271551.1 1114819..1115421(+) (ruvA) [Staphylococcus aureus strain P5]
MYAYVKGKLTHLYPTHVVVETAGVGYEIQTPNSYRFQKQLDHEVLIHTSLIVREDAQLLYGFSSEEEKDMFLSLIKVTGI
GPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKTARQIVLDLKGKVKITEEDSDSLLQVDATSTVQDQFVQEAML
ALEALGYSKRELAKVEKTLNKNKYDSVDEAVKAGLQLVVS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=565367 MKD48_RS05845 WP_000271551.1 1114819..1115421(+) (ruvA) [Staphylococcus aureus strain P5]
ATGTACGCGTATGTCAAAGGTAAGTTAACACATTTATATCCTACACACGTAGTTGTTGAAACTGCTGGTGTTGGTTATGA
AATTCAAACACCAAATTCTTATCGTTTTCAAAAGCAACTAGATCATGAAGTTTTAATTCATACATCTTTAATTGTTCGTG
AAGATGCACAATTATTGTATGGATTTAGTAGTGAAGAAGAGAAAGATATGTTCTTGAGTTTAATTAAAGTTACTGGTATT
GGTCCGAAATCAGCTTTAGCTATTTTAGCGACAAGTACGCCTAATGAAGTAAAACGTGCCATTGAAAATGAAAATGATAC
GTATTTAACTAAATTCCCAGGAATTGGTAAGAAAACGGCAAGACAGATTGTCTTAGATTTAAAAGGTAAAGTGAAAATCA
CTGAAGAAGATAGCGATTCATTATTACAAGTAGACGCTACTTCGACGGTGCAAGATCAATTCGTGCAAGAAGCAATGTTA
GCGTTAGAAGCATTAGGTTATTCTAAACGAGAGCTTGCAAAAGTTGAGAAAACGTTAAATAAAAATAAATATGACTCAGT
TGATGAAGCTGTTAAGGCAGGTCTTCAATTAGTTGTATCTTAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-128)

RuvA N terminal domain (RuvA_N)

(1-61)

RuvA, C-terminal domain (RuvA_C)

(156-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

46.734

99.5

0.465
  ruvA Streptococcus pneumoniae R6

46.231

99.5

0.46
  ruvA Streptococcus pneumoniae D39

46.231

99.5

0.46
  ruvA Bacillus subtilis subsp. subtilis str. 168

42.714

99.5

0.425