Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   KHX94_RS07155 Genome accession   NZ_CP074572
Coordinates   1497334..1498854 (+) Length   506 a.a.
NCBI ID   WP_213683362.1    Uniprot ID   -
Organism   Shewanella dokdonensis strain DSM 23626     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1492334..1503854
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KHX94_RS07135 (KHX94_07130) ilvC 1492709..1494190 (-) 1482 WP_213682900.1 ketol-acid reductoisomerase -
  KHX94_RS07140 (KHX94_07135) ilvY 1494354..1495226 (+) 873 WP_213682901.1 HTH-type transcriptional activator IlvY -
  KHX94_RS07145 (KHX94_07140) - 1495223..1496557 (-) 1335 WP_213682902.1 hemolysin family protein -
  KHX94_RS07150 (KHX94_07145) - 1496859..1497098 (-) 240 WP_213682903.1 hypothetical protein -
  KHX94_RS07155 (KHX94_07150) comM 1497334..1498854 (+) 1521 WP_213683362.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  KHX94_RS07160 (KHX94_07155) udp 1498873..1499634 (-) 762 WP_213682904.1 uridine phosphorylase -
  KHX94_RS07170 (KHX94_07165) - 1500170..1501345 (-) 1176 WP_213682905.1 type III PLP-dependent enzyme -
  KHX94_RS07175 (KHX94_07170) ygiD 1501704..1502498 (+) 795 WP_244859370.1 4,5-DOPA dioxygenase extradiol -
  KHX94_RS07180 (KHX94_07175) - 1502499..1503002 (-) 504 WP_213682906.1 hypothetical protein -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54195.30 Da        Isoelectric Point: 9.0989

>NTDB_id=565349 KHX94_RS07155 WP_213683362.1 1497334..1498854(+) (comM) [Shewanella dokdonensis strain DSM 23626]
MAIARVATRAAIGVNAPQVWVEAHLSNGLPAFNLVGLPEASVKEARERVRSALINAGFEFPQRRITINLAPADLPKQGGR
YDLPIAIGILAASGQLPLPPLAQHEFIGELALSGEIRECPGVLPVIVAARKQGMQLVMPQGNRSEAELVSYDGVKLAQHL
QHVAAYLHGQENLPGIDGGTQWQQPQAPNEHACLSDVIGQYQAKQALEIAAAGGHNLLMLGPPGTGKTMLASRIISLLPP
LNYEEALEVAAIHSVAGMAMEPSQFHQRPFRTPHHTSSAISLVGGGSVPRPGEISLAHLGVLFLDEVAEFPRRVLDCLRE
PMETGAVVISRAAAKLTFAARFQLIAAMNPSPCGDVGSDSRTTPDQIRRYLSRLSGPFIDRFDLTIEVPKLPPGTLTAQA
NTGETSAEIAARVTAARERQLSRAGVLNSQLGSKALKQAGFQAADLVFLEQSVTKLGLSVRSFHRLQRVARTIADLQQSA
GVERRHIAQALGYRAMDRLLAGLRAQ

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=565349 KHX94_RS07155 WP_213683362.1 1497334..1498854(+) (comM) [Shewanella dokdonensis strain DSM 23626]
ATTGCCATTGCCAGAGTCGCCACACGAGCAGCCATTGGGGTTAACGCCCCACAGGTATGGGTTGAGGCCCACCTTTCTAA
CGGATTACCCGCATTTAATCTGGTGGGACTTCCAGAAGCCTCGGTAAAAGAAGCCCGCGAACGTGTGCGCAGCGCACTCA
TCAATGCTGGGTTTGAGTTTCCACAACGGCGGATTACCATCAATTTAGCGCCTGCGGATCTGCCCAAGCAGGGCGGACGT
TATGACCTTCCCATTGCCATAGGTATTCTGGCAGCTTCAGGCCAGTTACCACTGCCGCCGTTGGCACAGCATGAATTTAT
CGGCGAATTAGCGCTCTCGGGAGAGATTCGGGAATGTCCCGGAGTACTCCCGGTGATTGTGGCGGCACGCAAACAGGGCA
TGCAGTTGGTAATGCCCCAAGGCAACCGCAGCGAAGCCGAGCTGGTGAGCTATGATGGCGTCAAACTAGCGCAGCATCTG
CAACATGTTGCGGCTTACCTGCATGGCCAGGAAAATTTGCCCGGCATCGATGGTGGCACCCAGTGGCAGCAACCACAGGC
GCCCAATGAACACGCTTGCCTGAGTGATGTTATTGGTCAATACCAGGCCAAACAAGCCTTAGAGATAGCCGCGGCTGGCG
GCCACAATTTACTGATGCTAGGCCCACCCGGCACCGGGAAAACCATGCTTGCCAGCCGGATTATCTCGCTGTTGCCGCCG
CTCAATTATGAAGAGGCATTAGAAGTCGCAGCAATTCATTCGGTGGCGGGCATGGCCATGGAACCCAGCCAATTTCACCA
ACGACCATTCCGTACCCCTCATCACACAAGTTCAGCCATTTCCTTGGTTGGTGGCGGCAGTGTGCCTCGGCCAGGAGAGA
TTTCATTGGCACATTTAGGCGTGTTATTTCTCGATGAAGTGGCCGAATTTCCACGGCGGGTACTGGATTGTTTGCGCGAA
CCCATGGAAACGGGAGCCGTGGTGATTTCTCGTGCCGCCGCCAAACTTACCTTTGCCGCTCGTTTTCAGTTGATCGCGGC
GATGAATCCCAGCCCTTGTGGTGATGTGGGTAGTGACAGCCGCACCACCCCAGATCAAATCCGCCGTTATCTGTCACGTC
TTTCCGGGCCATTTATCGATCGTTTTGATCTGACGATTGAAGTGCCCAAACTGCCACCCGGCACCTTGACCGCACAGGCA
AACACCGGAGAAACCAGTGCTGAGATTGCGGCCAGGGTCACGGCCGCTCGCGAACGACAACTTAGCCGTGCTGGCGTGTT
AAACAGTCAGCTAGGCAGTAAGGCATTGAAACAAGCCGGTTTTCAGGCAGCAGATCTGGTGTTTTTGGAGCAAAGTGTCA
CTAAGCTTGGGTTATCGGTACGCAGTTTTCATCGATTACAGCGAGTGGCACGCACCATTGCCGATTTGCAGCAATCGGCC
GGAGTTGAACGGCGTCATATCGCTCAAGCATTAGGTTATCGCGCAATGGATCGGCTTTTGGCGGGATTGCGGGCACAGTG
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(194-393)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-494)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.89

100

0.571
  comM Haemophilus influenzae Rd KW20

55.403

100

0.557
  comM Vibrio campbellii strain DS40M4

54.599

100

0.551
  comM Glaesserella parasuis strain SC1401

54.012

100

0.545
  comM Legionella pneumophila str. Paris

47.817

99.605

0.476
  comM Legionella pneumophila strain ERS1305867

47.817

99.605

0.476
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.676

100

0.437