Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   LILO_RS08855 Genome accession   NC_020450
Coordinates   1860979..1861968 (-) Length   329 a.a.
NCBI ID   WP_015426906.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis IO-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1855979..1866968
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LILO_RS08840 (lilo_1706) - 1857344..1858270 (-) 927 WP_042230563.1 peptidyl-prolyl cis-trans isomerase -
  LILO_RS08845 (lilo_1707) - 1858425..1859108 (-) 684 WP_015426904.1 O-methyltransferase -
  LILO_RS08850 (lilo_1708) pepF 1859111..1860916 (-) 1806 WP_042230565.1 oligoendopeptidase F Regulator
  LILO_RS08855 (lilo_1709) coiA 1860979..1861968 (-) 990 WP_015426906.1 competence protein CoiA Machinery gene
  LILO_RS08860 (lilo_1710) - 1862042..1863127 (-) 1086 WP_080619329.1 YdcF family protein -
  LILO_RS08865 (lilo_1711) - 1863278..1864126 (-) 849 WP_015426908.1 alpha/beta hydrolase -
  LILO_RS08870 (lilo_1712) - 1864320..1865741 (-) 1422 WP_012898314.1 NCS2 family permease -
  LILO_RS08875 (lilo_1713) - 1866048..1866884 (+) 837 WP_003130402.1 Cof-type HAD-IIB family hydrolase -

Sequence

Protein


Download         Length: 329 a.a.        Molecular weight: 39424.10 Da        Isoelectric Point: 9.0820

>NTDB_id=56477 LILO_RS08855 WP_015426906.1 1860979..1861968(-) (coiA) [Lactococcus lactis subsp. lactis IO-1]
MLTAIDENGQVVNLLEIEVKELTGKYFCPSCKSELFIKNGEIKMPHFAHKSLKACDLWLENESEQHLGLKKALYQWFKKT
DKVEIEAYIPEFKQRPDLLVNDKIAIEIQCSHLSMKRLKERTENYQVHGFTVLWLMGQDLWLKDQITELQKNLVYFSENR
GFYYWELDFKAQKMRLKSLIHEDLRGKIIYLQEEIPFGEGRLIEQLRLPFLSQKLLTIPLIVDLKLAEFIRRQLYYCSPK
WLKLQEKYYQRGENLLNLTFERSFIAPLGLNLLEVFDDKIPLHKFTQIKQNINLYYENFLINFQQNSFKAVYPPRFYAIM
KKQKKDMNK

Nucleotide


Download         Length: 990 bp        

>NTDB_id=56477 LILO_RS08855 WP_015426906.1 1860979..1861968(-) (coiA) [Lactococcus lactis subsp. lactis IO-1]
ATGTTGACAGCAATTGATGAAAATGGACAAGTAGTAAACTTATTAGAAATAGAAGTAAAAGAACTGACAGGAAAATATTT
TTGTCCTTCTTGTAAATCAGAGTTATTTATAAAAAATGGTGAAATAAAGATGCCTCACTTTGCTCATAAATCTCTCAAAG
CTTGCGACTTATGGCTTGAAAACGAATCTGAACAACATTTAGGATTAAAAAAAGCACTCTATCAATGGTTTAAAAAAACT
GATAAGGTGGAAATTGAAGCTTATATTCCTGAATTTAAGCAGAGGCCAGATTTATTGGTAAATGATAAAATAGCTATTGA
AATTCAATGTTCTCATCTTTCTATGAAACGTTTAAAAGAAAGGACAGAGAATTATCAAGTCCACGGTTTTACGGTGCTTT
GGCTTATGGGGCAAGATTTATGGTTAAAAGACCAAATAACAGAACTTCAAAAAAATCTAGTCTATTTTTCAGAAAATAGA
GGTTTCTATTATTGGGAGTTAGATTTCAAAGCTCAGAAGATGAGATTAAAATCCCTGATTCATGAAGATTTGCGTGGAAA
AATTATTTATTTACAAGAAGAAATTCCTTTTGGGGAAGGACGACTTATTGAGCAATTACGACTGCCTTTTTTATCACAAA
AGTTACTGACAATACCACTTATTGTTGATCTTAAACTAGCGGAATTTATTCGTCGGCAACTTTATTATTGTTCACCAAAA
TGGTTGAAACTTCAGGAAAAATATTACCAGAGAGGTGAAAATTTGTTGAATTTGACTTTTGAACGTTCTTTTATTGCGCC
TTTGGGATTGAACTTACTTGAAGTTTTTGATGATAAAATTCCTTTACATAAATTTACTCAAATTAAGCAGAATATTAACC
TCTATTATGAAAACTTTTTAATAAATTTTCAGCAAAATAGCTTTAAGGCAGTCTATCCTCCCCGTTTCTATGCTATAATG
AAAAAGCAGAAGAAGGATATGAATAAATGA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(1-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Lactococcus lactis subsp. cremoris KW2

75.153

99.088

0.745
  coiA Streptococcus mitis NCTC 12261

43.789

97.872

0.429
  coiA Streptococcus pneumoniae TIGR4

43.478

97.872

0.426
  coiA Streptococcus pneumoniae Rx1

43.478

97.872

0.426
  coiA Streptococcus pneumoniae D39

43.478

97.872

0.426
  coiA Streptococcus pneumoniae R6

43.478

97.872

0.426

Multiple sequence alignment