Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   LILO_RS08850 Genome accession   NC_020450
Coordinates   1859111..1860916 (-) Length   601 a.a.
NCBI ID   WP_042230565.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis IO-1     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1854111..1865916
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LILO_RS08835 (lilo_1705) alaS 1854460..1857078 (-) 2619 WP_015426902.1 alanine--tRNA ligase -
  LILO_RS08840 (lilo_1706) - 1857344..1858270 (-) 927 WP_042230563.1 peptidyl-prolyl cis-trans isomerase -
  LILO_RS08845 (lilo_1707) - 1858425..1859108 (-) 684 WP_015426904.1 O-methyltransferase -
  LILO_RS08850 (lilo_1708) pepF 1859111..1860916 (-) 1806 WP_042230565.1 oligoendopeptidase F Regulator
  LILO_RS08855 (lilo_1709) coiA 1860979..1861968 (-) 990 WP_015426906.1 competence protein CoiA Machinery gene
  LILO_RS08860 (lilo_1710) - 1862042..1863127 (-) 1086 WP_080619329.1 YdcF family protein -
  LILO_RS08865 (lilo_1711) - 1863278..1864126 (-) 849 WP_015426908.1 alpha/beta hydrolase -
  LILO_RS08870 (lilo_1712) - 1864320..1865741 (-) 1422 WP_012898314.1 NCS2 family permease -

Sequence

Protein


Download         Length: 601 a.a.        Molecular weight: 70069.95 Da        Isoelectric Point: 4.8911

>NTDB_id=56476 LILO_RS08850 WP_042230565.1 1859111..1860916(-) (pepF) [Lactococcus lactis subsp. lactis IO-1]
MAKNRNEIPEKLTWDLTTIYKTDKEWEAELTRIKSELSLVEETDPGHLLDSAESLLIITEKMLSISQQVEKLYVYASMKN
DQDTREAKYQEYQSKATALYVKFGEVYAFYEPEFLKISKEVYNKWLGELKKLKNYDHMFERLFAKKAHILSQKEEKLLAA
AGEIFESPSETFEIFDNADIKLPMVKNESDEMVQLTHGNYSSLMESKNREVRKAAYKALYSNYEQYQHTYAKTLQTNVKV
HNLNAQIRSYDSARQAALANNFVPEKVYDVLMEAIHQYLPLLHRYVELRKKILGISDFKMYDIYTPLSNLDYKFNYEDGV
KKAEEVLAIFGKEYKEKVKAAFEQRWIDVEENIGKRSGAYSGGSYDTNAFMLLNWQETLDDLFTLVHEMGHSMHSAFTRE
NQPYVYGDYPIFLAEIASTTNENILTETLLKESKDDKERFALLNHWLDSFRGTVFRQSQFAEFEQKIHEADAAGEVLTSE
YLNSLYGEINEKYYNLTAKENPEIQYEWARIPHFYYNFYVFQYATGFAAATFLAEKVVHGSDDDRQKYLEYLKAGSSAYP
LEVIAKAGVDMESTDYLDAAFELFENRLSELEKLVEKGVHL

Nucleotide


Download         Length: 1806 bp        

>NTDB_id=56476 LILO_RS08850 WP_042230565.1 1859111..1860916(-) (pepF) [Lactococcus lactis subsp. lactis IO-1]
ATGGCTAAGAACAGAAATGAAATTCCTGAAAAATTAACTTGGGATTTGACAACAATTTATAAAACAGATAAAGAATGGGA
AGCAGAGCTAACTAGAATAAAAAGCGAACTTTCACTCGTTGAAGAGACGGATCCTGGTCATTTACTTGATTCAGCTGAAA
GTCTTCTGATAATTACCGAAAAAATGCTATCCATTTCTCAACAAGTTGAAAAACTATATGTTTATGCTTCAATGAAAAAT
GACCAAGATACCAGAGAGGCTAAGTATCAGGAGTATCAGTCAAAAGCAACAGCCCTCTATGTGAAATTCGGAGAGGTCTA
TGCCTTCTATGAACCTGAGTTTTTGAAAATTTCAAAAGAAGTCTATAACAAATGGTTGGGGGAACTTAAAAAATTAAAAA
ACTATGACCATATGTTTGAGCGACTTTTTGCTAAAAAAGCTCATATTCTTAGTCAAAAAGAGGAAAAGTTATTGGCTGCG
GCTGGTGAAATTTTTGAAAGTCCTTCAGAAACTTTTGAAATTTTTGATAATGCAGATATTAAGTTACCTATGGTCAAAAA
TGAATCTGATGAGATGGTCCAACTCACACATGGAAATTACTCTTCCTTAATGGAAAGTAAGAATAGAGAAGTACGAAAAG
CAGCTTACAAAGCACTTTATAGTAATTATGAACAATATCAGCATACTTATGCAAAGACCTTACAGACCAATGTAAAAGTC
CATAATCTTAATGCCCAAATCCGCTCTTATGATTCAGCCCGTCAAGCTGCTCTGGCTAATAATTTTGTTCCAGAAAAAGT
TTATGATGTTTTGATGGAGGCCATTCATCAATATTTGCCACTTTTACATCGTTATGTTGAACTACGCAAGAAAATTTTAG
GAATTTCTGATTTCAAGATGTATGATATCTATACTCCATTATCTAATTTAGATTATAAGTTTAACTATGAAGATGGAGTG
AAAAAAGCAGAAGAAGTTTTAGCGATATTTGGTAAAGAATATAAAGAAAAAGTTAAAGCAGCATTTGAACAAAGATGGAT
TGATGTCGAAGAAAATATCGGAAAACGTTCGGGTGCTTATTCAGGTGGATCTTATGATACCAATGCTTTTATGCTTCTCA
ATTGGCAAGAAACATTAGATGATCTTTTTACTTTAGTTCATGAAATGGGGCACTCAATGCATAGTGCTTTCACGCGTGAA
AATCAACCTTATGTTTATGGGGATTATCCAATCTTTTTAGCTGAAATTGCCTCAACCACAAATGAAAATATTTTAACTGA
GACTTTATTAAAGGAAAGTAAAGATGATAAAGAGCGCTTCGCCCTTTTGAATCACTGGCTTGATAGTTTCCGTGGAACTG
TTTTCCGTCAGAGTCAATTTGCCGAATTTGAACAAAAAATCCATGAAGCAGATGCCGCCGGAGAAGTTTTAACAAGTGAA
TACTTAAACTCACTTTATGGTGAAATAAATGAAAAATACTATAATTTAACAGCCAAAGAAAATCCAGAAATTCAGTATGA
ATGGGCTAGAATTCCGCATTTTTATTATAATTTCTATGTTTTTCAATACGCAACAGGTTTTGCTGCGGCAACTTTCTTAG
CTGAAAAAGTTGTTCACGGTTCAGATGATGATCGTCAAAAATATCTTGAATATTTGAAGGCAGGTTCCTCAGCTTATCCT
TTAGAAGTAATTGCCAAAGCTGGAGTTGATATGGAATCTACCGATTATTTAGATGCCGCCTTTGAGCTTTTTGAAAATCG
ATTGAGTGAATTAGAAAAATTAGTTGAAAAAGGAGTTCATCTTTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(113-181)

Peptidase family M3 (Peptidase_M3)

(203-582)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

64.132

100

0.646

Multiple sequence alignment