Detailed information NTG0564751

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: KHW14_RS22545
• Genome accession: NZ_CP074412
• Coordinates: 5161167..5162039 (+)
• Length: 290 a.a.
• NCBI ID: WP_096767275.1
• Uniprot ID: -
• Organism: Pseudomonas viridiflava strain U625
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5156167..5167039

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KHW14_RS22530 (KHW14_22530)	pilA2	5157591..5158019 (-)	429	WP_043304828.1	pilin	Machinery gene
KHW14_RS22535 (KHW14_22535)	pilB	5158245..5159945 (+)	1701	WP_096767277.1	type IV-A pilus assembly ATPase PilB	Machinery gene
KHW14_RS22540 (KHW14_22540)	pilC	5159948..5161165 (+)	1218	WP_043304826.1	type II secretion system F family protein	Machinery gene
KHW14_RS22545 (KHW14_22545)	pilD	5161167..5162039 (+)	873	WP_096767275.1	A24 family peptidase	Machinery gene
KHW14_RS22550 (KHW14_22550)	coaE	5162036..5162659 (+)	624	WP_025993968.1	dephospho-CoA kinase	-
KHW14_RS22555 (KHW14_22555)	yacG	5162656..5162865 (+)	210	WP_004887444.1	DNA gyrase inhibitor YacG	-
KHW14_RS22560 (KHW14_22560)	-	5163265..5163726 (-)	462	WP_162868424.1	hypothetical protein	-
KHW14_RS22565 (KHW14_22565)	-	5163851..5164480 (+)	630	WP_004884092.1	DUF1780 domain-containing protein	-
KHW14_RS22570 (KHW14_22570)	-	5164477..5165022 (+)	546	WP_043305100.1	MOSC domain-containing protein	-
KHW14_RS22575 (KHW14_22575)	-	5165036..5165209 (+)	174	WP_004884089.1	DUF3094 family protein	-
KHW14_RS22580 (KHW14_22580)	-	5165273..5166571 (+)	1299	WP_058432300.1	NAD(P)/FAD-dependent oxidoreductase	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 31970.13 Da
• Isoelectric Point: 7.2387

>NTDB_id=564751 KHW14_RS22545 WP_096767275.1 5161167..5162039(+) (pilD) [Pseudomonas viridiflava strain U625]
MPLLDFLASSTLAFVIFIGVLGLLIGSFLNVVVYRLPKMMEHDWKAQSREMLGLPAEPEQPTFNLILPHSRCPQCAHQIR
PWENLPVVSYLMLGGKCSQCKAPISKRYPLVELVCAVLSAYVAWHFGFGWQTAAMLVLSWGLLTMSLIDADTQLLPDSLV
LPLMWLGLIVNAFGLFTSLSDALWGAVAGYLSLWSVFWLFKLITGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMMRLRNVESGTPIPFGPYLAIAGWIALLWGGQITDSYLQFAGFK

Nucleotide

• Length: 873 bp

>NTDB_id=564751 KHW14_RS22545 WP_096767275.1 5161167..5162039(+) (pilD) [Pseudomonas viridiflava strain U625]
ATGCCCCTCCTCGACTTCCTGGCCAGCTCAACGCTGGCCTTCGTTATTTTCATTGGCGTACTCGGTCTCCTGATCGGAAG
CTTCCTCAACGTCGTGGTCTACCGCTTACCCAAAATGATGGAGCACGACTGGAAAGCCCAGTCGCGGGAAATGCTCGGCC
TGCCCGCCGAGCCTGAACAGCCCACCTTCAACCTGATCCTCCCCCACTCCCGCTGCCCGCAATGCGCGCATCAGATCCGT
CCTTGGGAAAACCTGCCGGTGGTCAGCTACCTGATGCTTGGTGGAAAGTGTTCGCAATGCAAGGCACCGATCAGCAAGCG
CTATCCGCTGGTCGAGCTGGTCTGTGCGGTGTTGTCGGCCTATGTGGCCTGGCATTTCGGCTTTGGCTGGCAGACGGCAG
CAATGCTGGTGCTGAGTTGGGGCTTGTTGACGATGAGCCTGATAGACGCCGACACCCAGCTGCTGCCTGACTCACTCGTA
TTGCCGTTGATGTGGCTGGGCCTGATCGTCAACGCATTTGGCCTGTTCACTTCGTTAAGCGACGCCTTGTGGGGCGCTGT
GGCAGGTTATCTGTCGTTGTGGTCGGTGTTCTGGCTGTTCAAGCTGATCACGGGCAAGGAAGGCATGGGCTACGGCGACT
TCAAACTGCTGGCCATGCTCGGGGCGTGGGGCGGCTGGCAGATCCTGCCGCTGACGATTCTGCTGTCGTCACTGGTGGGC
GCCATTCTTGGCGTGATAATGATGCGATTGCGCAATGTCGAATCCGGTACTCCGATCCCCTTCGGTCCTTATCTGGCCAT
CGCGGGGTGGATCGCTTTGCTCTGGGGTGGTCAAATAACCGACTCCTATTTGCAGTTTGCCGGTTTCAAATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

• Type IV leader peptidase family (Peptidase_A24) (136-245)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	54.579	94.138	0.514
pilD	Vibrio cholerae strain A1552	53.846	94.138	0.507
pilD	Acinetobacter baumannii D1279779	50.871	98.966	0.503
pilD	Acinetobacter nosocomialis M2	50.174	98.966	0.497
pilD	Neisseria gonorrhoeae MS11	52.756	87.586	0.462