Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   KG087_RS11340 Genome accession   NZ_CP074379
Coordinates   2401697..2403889 (-) Length   730 a.a.
NCBI ID   WP_010492344.1    Uniprot ID   A0A0R1ERL9
Organism   Lacticaseibacillus zeae strain FBL8     
Function   processing and transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 2396697..2408889
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KG087_RS11320 (KG087_11320) - 2397104..2397271 (+) 168 WP_155807535.1 hypothetical protein -
  KG087_RS11325 (KG087_11325) - 2397573..2398550 (+) 978 WP_010492325.1 aldo/keto reductase -
  KG087_RS11330 (KG087_11330) - 2398837..2400192 (-) 1356 WP_010492339.1 threonine/serine exporter family protein -
  KG087_RS11335 (KG087_11335) - 2400306..2401685 (-) 1380 WP_010492342.1 bacteriocin secretion accessory protein -
  KG087_RS11340 (KG087_11340) comA 2401697..2403889 (-) 2193 WP_010492344.1 peptide cleavage/export ABC transporter Regulator
  KG087_RS11345 (KG087_11345) - 2404517..2405818 (+) 1302 WP_075760652.1 GHKL domain-containing protein -
  KG087_RS15000 (KG087_11350) - 2405820..2406625 (+) 806 Protein_2214 response regulator transcription factor -
  KG087_RS11355 (KG087_11355) - 2406807..2407091 (-) 285 WP_010492350.1 hypothetical protein -
  KG087_RS11360 (KG087_11360) - 2407567..2407725 (-) 159 WP_010492208.1 hypothetical protein -
  KG087_RS11365 (KG087_11365) - 2407753..2407950 (-) 198 WP_010492355.1 hypothetical protein -

Sequence

Protein


Download         Length: 730 a.a.        Molecular weight: 81633.07 Da        Isoelectric Point: 7.2308

>NTDB_id=564504 KG087_RS11340 WP_010492344.1 2401697..2403889(-) (comA) [Lacticaseibacillus zeae strain FBL8]
MFKYKFKLGQATYYKRHYTPQVDERDCGVAALNMLLKFHGSDYSLAHLRQLAKTDQEGTTALGIVRAAQELHFETKAVKA
DMTLFDLDDAPYPILVHVLKRGELLHYYVVFKATKDHILIGDPDPSVAMTWLSKDEFAKEWSGVAIFIAPEPQYQPHKED
KGSLFAFVPLLARQKVIIANIIVAALLITVISIAGSYFLQSIIDTYIPSAMRTTLGMIAIGLILAYILQSVLTYGQNFLM
AVLGQRLSIDVILGYVRHLYELPMSFFATRRTGEIVSRFSDANKIIDALANTIMTLFLDVWIVLILGIVLGIQNTTLFLV
SLIAVPCYLVIVFAFQRPFNRLNQETMESNAILSSSIIEDLNGIETIKSLTGEKVSYERVDREFVTYLKKSFNYTKADQL
QQAIKGLLKLVLNVVVLWIGASLVMANKMSLGQMLTFNALLSYFTNPLESIINLQPKLQMAKVANNRLNEVYLVESEFKE
QRHLTDRSLIDGAINVHDVSFKYGFGQDILKHIHLEVPANAKYTIVGMSGSGKSTLAKLLVGFYPVETGKGKITFNGAQI
NDVTLTTLRQYIEYVPQEPFIFSGSVMENLTLGSRADLTQAQLEDACAVAEIATDIMNLPQMWQTKLTESGSILSGGQKQ
RLAIARALLSPAKVLIFDESTSSLDTITERRIVDRLLAMKDRTIIFVAHRLTIAAKTEQIVVMDHGEIVEQGNHAELLAR
QGYYARLVSE

Nucleotide


Download         Length: 2193 bp        

>NTDB_id=564504 KG087_RS11340 WP_010492344.1 2401697..2403889(-) (comA) [Lacticaseibacillus zeae strain FBL8]
ATGTTCAAATACAAATTCAAACTAGGCCAAGCAACATACTACAAACGTCATTACACGCCTCAGGTGGATGAGCGTGATTG
CGGCGTTGCGGCGCTTAATATGTTGCTGAAGTTTCATGGGTCCGACTATTCACTCGCACATTTACGGCAACTGGCGAAGA
CCGATCAAGAAGGAACGACGGCGTTGGGCATTGTCCGCGCCGCCCAGGAACTTCATTTTGAAACCAAGGCAGTTAAGGCG
GATATGACGTTGTTTGATTTGGATGATGCGCCATATCCGATCTTGGTGCATGTTTTGAAGCGCGGTGAGCTGTTGCATTA
TTATGTCGTGTTTAAGGCGACGAAGGATCATATCTTAATCGGTGATCCTGACCCTTCAGTCGCGATGACCTGGCTTTCAA
AAGATGAGTTTGCCAAGGAGTGGTCGGGGGTCGCTATTTTCATTGCGCCTGAACCGCAATATCAACCGCACAAAGAGGAC
AAAGGCAGTTTGTTTGCCTTCGTGCCTTTGCTTGCGCGGCAAAAAGTGATCATTGCCAATATTATTGTTGCGGCTTTGTT
GATCACGGTGATTAGTATTGCCGGGTCGTATTTTCTGCAATCGATCATTGATACCTACATTCCAAGTGCTATGCGGACAA
CCTTGGGCATGATTGCCATTGGGCTGATTCTTGCTTACATCCTTCAATCTGTTTTGACGTATGGTCAGAACTTTTTGATG
GCGGTTTTAGGCCAGCGGTTGTCGATTGACGTTATTTTAGGTTACGTCCGGCATCTGTATGAATTACCTATGTCTTTTTT
TGCAACGCGCCGGACAGGGGAGATTGTGTCGCGGTTTTCGGACGCCAATAAAATTATCGATGCCTTGGCGAATACGATCA
TGACCCTGTTTCTTGATGTTTGGATCGTGCTTATTTTAGGTATTGTTCTGGGCATTCAAAATACCACGTTGTTCCTGGTG
TCCTTAATTGCGGTGCCTTGTTACTTGGTGATTGTTTTCGCGTTTCAACGTCCTTTCAATCGGCTGAATCAAGAGACAAT
GGAAAGTAATGCCATTTTGAGCTCATCGATTATTGAAGATCTGAACGGTATTGAGACCATTAAGTCGCTGACAGGCGAAA
AAGTCAGTTATGAGCGGGTTGACCGTGAATTTGTCACGTATTTAAAGAAGTCATTCAATTACACGAAAGCCGACCAGCTT
CAACAAGCTATCAAAGGGTTGCTGAAGCTTGTCTTGAATGTGGTGGTGTTGTGGATTGGGGCGAGTCTGGTGATGGCTAA
CAAGATGAGCTTGGGGCAGATGCTGACGTTCAATGCCTTGCTGTCATACTTCACCAATCCGTTAGAAAGTATCATCAACT
TGCAACCAAAATTGCAAATGGCCAAGGTGGCGAATAATCGGCTGAATGAGGTTTACTTGGTTGAATCTGAGTTTAAGGAA
CAGCGTCATCTGACCGATCGCAGCCTGATTGATGGTGCCATCAACGTGCATGACGTTTCCTTTAAATATGGGTTTGGTCA
GGATATTTTAAAGCATATCCATCTTGAGGTGCCCGCAAACGCCAAATACACGATTGTCGGTATGAGTGGGTCAGGTAAAT
CAACTTTGGCCAAATTATTGGTCGGCTTTTACCCCGTCGAAACAGGCAAGGGAAAAATCACCTTCAATGGCGCGCAGATC
AATGATGTGACGCTCACGACGCTGCGGCAATATATCGAATATGTGCCGCAAGAACCGTTTATTTTTTCCGGATCGGTGAT
GGAAAACTTAACGTTAGGCAGTCGTGCCGATTTGACGCAGGCGCAACTTGAAGACGCATGTGCCGTTGCGGAGATTGCCA
CGGATATTATGAATCTGCCGCAAATGTGGCAGACCAAGCTCACAGAAAGCGGGAGCATTTTATCAGGTGGTCAGAAGCAA
CGCTTGGCGATTGCGCGGGCGTTGTTGTCGCCGGCCAAAGTGCTGATTTTTGATGAGTCGACTAGCAGTTTGGATACCAT
CACAGAGCGGCGGATTGTGGATCGGCTGTTGGCAATGAAGGATCGAACGATTATTTTTGTCGCCCACCGACTGACCATCG
CGGCTAAAACCGAACAGATCGTGGTGATGGATCATGGAGAAATTGTTGAGCAGGGAAATCATGCCGAACTGCTGGCAAGG
CAGGGATATTATGCGCGGTTGGTGAGTGAATAA

Domains

Predicted by InterproScan.

Peptidase C39 family (Peptidase_C39)

(16-152)

ABC transporter (ABC_tran)

(510-662)

ABC transporter transmembrane region (ABC_membrane)

(180-448)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0R1ERL9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Streptococcus mitis NCTC 12261

58.881

97.945

0.577
  comA Streptococcus pneumoniae Rx1

58.881

97.945

0.577
  comA Streptococcus pneumoniae D39

58.881

97.945

0.577
  comA Streptococcus pneumoniae R6

58.881

97.945

0.577
  comA Streptococcus mitis SK321

58.462

97.945

0.573
  comA Streptococcus pneumoniae TIGR4

58.462

97.945

0.573
  comA Streptococcus gordonii str. Challis substr. CH1

57.183

98.219

0.562
  comA/nlmT Streptococcus mutans UA159

54.986

98.904

0.544