Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   KG086_RS02040 Genome accession   NZ_CP074378
Coordinates   425789..426229 (+) Length   146 a.a.
NCBI ID   WP_213224247.1    Uniprot ID   -
Organism   Lacticaseibacillus chiayiensis strain FBL7     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 418320..457277 425789..426229 within 0


Gene organization within MGE regions


Location: 418320..457277
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KG086_RS01975 (KG086_01975) - 418320..419489 (-) 1170 WP_213224238.1 site-specific integrase -
  KG086_RS01980 (KG086_01980) - 419664..420284 (-) 621 WP_213224239.1 hypothetical protein -
  KG086_RS01985 (KG086_01985) - 420341..421114 (-) 774 WP_213224240.1 XRE family transcriptional regulator -
  KG086_RS01990 (KG086_01990) - 421272..421523 (+) 252 WP_005714763.1 helix-turn-helix domain-containing protein -
  KG086_RS01995 (KG086_01995) - 421520..422293 (+) 774 WP_213224241.1 phage antirepressor -
  KG086_RS02000 (KG086_02000) - 422290..422439 (+) 150 WP_191981862.1 hypothetical protein -
  KG086_RS13820 - 422511..422636 (-) 126 WP_276513958.1 hypothetical protein -
  KG086_RS02010 (KG086_02010) - 422711..423067 (+) 357 WP_019897215.1 DUF771 domain-containing protein -
  KG086_RS02015 (KG086_02015) - 423153..423305 (+) 153 WP_213224242.1 hypothetical protein -
  KG086_RS02020 (KG086_02020) - 423310..423513 (+) 204 WP_213224243.1 hypothetical protein -
  KG086_RS02025 (KG086_02025) - 423531..424418 (+) 888 WP_213224244.1 DUF1351 domain-containing protein -
  KG086_RS02030 (KG086_02030) - 424418..425128 (+) 711 WP_213224245.1 ERF family protein -
  KG086_RS02035 (KG086_02035) - 425106..425774 (+) 669 WP_213224246.1 putative HNHc nuclease -
  KG086_RS02040 (KG086_02040) ssb 425789..426229 (+) 441 WP_213224247.1 single-stranded DNA-binding protein Machinery gene
  KG086_RS02045 (KG086_02045) - 426244..427041 (+) 798 WP_213224248.1 replication protein -
  KG086_RS02050 (KG086_02050) - 427028..427810 (+) 783 WP_213224249.1 ATP-binding protein -
  KG086_RS02055 (KG086_02055) - 427807..428139 (+) 333 WP_213224250.1 hypothetical protein -
  KG086_RS02060 (KG086_02060) - 428136..428585 (+) 450 WP_213224251.1 hypothetical protein -
  KG086_RS02065 (KG086_02065) - 428632..428886 (+) 255 WP_213224252.1 hypothetical protein -
  KG086_RS02070 (KG086_02070) - 428883..429296 (+) 414 WP_213224253.1 RusA family crossover junction endodeoxyribonuclease -
  KG086_RS02075 (KG086_02075) - 429309..429620 (+) 312 WP_213224254.1 hypothetical protein -
  KG086_RS02080 (KG086_02080) - 429610..429981 (+) 372 WP_213224255.1 hypothetical protein -
  KG086_RS02085 (KG086_02085) - 430060..430290 (+) 231 WP_213224256.1 hypothetical protein -
  KG086_RS02090 (KG086_02090) - 430293..430502 (+) 210 WP_213224257.1 hypothetical protein -
  KG086_RS02095 (KG086_02095) - 430844..431287 (+) 444 WP_213224258.1 ArpU family phage packaging/lysis transcriptional regulator -
  KG086_RS02105 (KG086_02105) - 431970..433187 (+) 1218 WP_213224259.1 GcrA family cell cycle regulator -
  KG086_RS02110 (KG086_02110) - 433174..433722 (+) 549 WP_213224260.1 NUMOD4 domain-containing protein -
  KG086_RS02115 (KG086_02115) - 433715..434104 (+) 390 WP_213224261.1 ribonucleoside-diphosphate reductase -
  KG086_RS02120 (KG086_02120) - 434106..434270 (+) 165 WP_213224262.1 hypothetical protein -
  KG086_RS02125 (KG086_02125) - 434276..434764 (+) 489 WP_213224263.1 HNH endonuclease -
  KG086_RS02130 (KG086_02130) - 434899..435372 (+) 474 WP_213224264.1 phage terminase small subunit P27 family -
  KG086_RS02135 (KG086_02135) - 435369..437261 (+) 1893 WP_213224265.1 terminase large subunit -
  KG086_RS02140 (KG086_02140) - 437248..437457 (+) 210 WP_213224266.1 hypothetical protein -
  KG086_RS02145 (KG086_02145) - 437457..438644 (+) 1188 WP_213224267.1 phage portal protein -
  KG086_RS02150 (KG086_02150) - 438622..439338 (+) 717 WP_213224268.1 head maturation protease, ClpP-related -
  KG086_RS02155 (KG086_02155) - 439338..440579 (+) 1242 WP_213224269.1 phage major capsid protein -
  KG086_RS02160 (KG086_02160) - 440651..440959 (+) 309 WP_213224270.1 hypothetical protein -
  KG086_RS02165 (KG086_02165) - 440949..441293 (+) 345 WP_213224271.1 phage head closure protein -
  KG086_RS02170 (KG086_02170) - 441296..441715 (+) 420 WP_213224272.1 HK97-gp10 family putative phage morphogenesis protein -
  KG086_RS02175 (KG086_02175) - 441712..442083 (+) 372 WP_213224273.1 DUF806 family protein -
  KG086_RS02180 (KG086_02180) - 442095..442727 (+) 633 WP_213224274.1 phage tail protein -
  KG086_RS02185 (KG086_02185) - 442885..443235 (+) 351 WP_213224275.1 phage tail tube assembly chaperone -
  KG086_RS02190 (KG086_02190) - 443288..443443 (+) 156 WP_223602754.1 hypothetical protein -
  KG086_RS02195 (KG086_02195) - 443440..447549 (+) 4110 WP_213224276.1 tape measure protein -
  KG086_RS02200 (KG086_02200) - 447550..449622 (+) 2073 WP_213224277.1 distal tail protein Dit -
  KG086_RS02205 (KG086_02205) - 449623..452115 (+) 2493 WP_213224278.1 phage tail spike protein -
  KG086_RS02210 (KG086_02210) - 452117..452407 (+) 291 WP_213224279.1 hypothetical protein -
  KG086_RS13665 - 452400..452531 (+) 132 WP_005714777.1 XkdX family protein -
  KG086_RS02215 (KG086_02215) - 452562..452948 (+) 387 WP_016373433.1 hypothetical protein -
  KG086_RS02220 (KG086_02220) - 452929..453135 (+) 207 WP_213224280.1 hypothetical protein -
  KG086_RS13670 - 453132..453467 (+) 336 Protein_442 phage holin -
  KG086_RS02230 (KG086_02230) - 453721..455019 (+) 1299 WP_213224282.1 LysM peptidoglycan-binding domain-containing protein -
  KG086_RS02235 (KG086_02235) - 455268..456053 (+) 786 WP_129301857.1 hypothetical protein -
  KG086_RS02240 (KG086_02240) - 456138..457277 (-) 1140 WP_129301858.1 trans-sulfuration enzyme family protein -

Sequence

Protein


Download         Length: 146 a.a.        Molecular weight: 16018.74 Da        Isoelectric Point: 5.7051

>NTDB_id=564458 KG086_RS02040 WP_213224247.1 425789..426229(+) (ssb) [Lacticaseibacillus chiayiensis strain FBL7]
MLNSVALTGRLTKPVDLRYTQSGTAVGSFTIAVDRQFRSANGERETDFINCAIWRKSAENFANFTHKGALVGIEGHIQTR
TYDNAQGQRVYVTEVIVENFALLEPKGSSQGQPTQPTNQGYVGNQPANYTQPPASQPPISDEDLPF

Nucleotide


Download         Length: 441 bp        

>NTDB_id=564458 KG086_RS02040 WP_213224247.1 425789..426229(+) (ssb) [Lacticaseibacillus chiayiensis strain FBL7]
ATGCTTAATTCAGTTGCTTTAACAGGCAGATTAACTAAACCAGTTGATCTTCGCTATACGCAAAGCGGAACAGCAGTTGG
CTCATTTACGATTGCTGTTGATCGCCAATTTCGCAGCGCAAACGGCGAACGTGAAACTGACTTCATCAATTGTGCCATCT
GGCGTAAGTCCGCTGAGAACTTTGCCAATTTCACTCACAAGGGTGCACTTGTTGGCATCGAAGGCCATATTCAAACGCGT
ACGTACGACAATGCACAGGGCCAACGAGTCTATGTGACCGAAGTCATCGTTGAGAATTTTGCGCTCTTGGAGCCTAAAGG
TTCATCGCAGGGACAACCAACTCAGCCGACTAATCAAGGATATGTTGGTAATCAACCAGCCAATTACACTCAACCGCCAG
CTAGTCAGCCACCGATCAGCGATGAAGACTTGCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

52.353

100

0.61
  ssbA Bacillus subtilis subsp. subtilis str. 168

60.377

72.603

0.438
  ssb Vibrio cholerae strain A1552

33.14

100

0.39
  ssbB Bacillus subtilis subsp. subtilis str. 168

53.774

72.603

0.39
  ssbB Streptococcus sobrinus strain NIDR 6715-7

36.301

100

0.363