Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   HLG70_RS12040 Genome accession   NZ_CP074375
Coordinates   2681370..2682896 (-) Length   508 a.a.
NCBI ID   WP_171664621.1    Uniprot ID   -
Organism   Achromobacter deleyi strain As-55     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 2659402..2681005 2681370..2682896 flank 365


Gene organization within MGE regions


Location: 2659402..2682896
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HLG70_RS29690 - 2659402..2659617 (-) 216 WP_326491095.1 hypothetical protein -
  HLG70_RS11915 (HLG70_11915) - 2659720..2660823 (-) 1104 WP_171664602.1 AGE family epimerase/isomerase -
  HLG70_RS11920 (HLG70_11920) - 2660972..2661184 (-) 213 WP_008159938.1 hypothetical protein -
  HLG70_RS11925 (HLG70_11925) - 2661508..2661732 (-) 225 WP_171664603.1 hypothetical protein -
  HLG70_RS11930 (HLG70_11930) - 2661804..2662550 (-) 747 WP_171664604.1 sulfite exporter TauE/SafE family protein -
  HLG70_RS11935 (HLG70_11935) - 2662610..2663521 (-) 912 WP_171664605.1 DMT family transporter -
  HLG70_RS11940 (HLG70_11940) - 2663682..2664152 (+) 471 WP_008159929.1 Lrp/AsnC family transcriptional regulator -
  HLG70_RS11945 (HLG70_11945) - 2664276..2664509 (+) 234 WP_171664606.1 hypothetical protein -
  HLG70_RS11950 (HLG70_11950) - 2664609..2665208 (-) 600 WP_171664607.1 YSC84-related protein -
  HLG70_RS11955 (HLG70_11955) - 2665345..2665599 (-) 255 WP_171664608.1 hypothetical protein -
  HLG70_RS11960 (HLG70_11960) - 2665803..2666669 (-) 867 WP_171664609.1 MurR/RpiR family transcriptional regulator -
  HLG70_RS11965 (HLG70_11965) - 2666803..2667801 (+) 999 WP_171664610.1 tripartite tricarboxylate transporter substrate-binding protein -
  HLG70_RS11970 (HLG70_11970) - 2667813..2668766 (+) 954 WP_171664611.1 succinylglutamate desuccinylase/aspartoacylase family protein -
  HLG70_RS11975 (HLG70_11975) - 2668809..2669243 (-) 435 WP_171664612.1 GNAT family acetyltransferase -
  HLG70_RS11980 (HLG70_11980) - 2669506..2670420 (-) 915 WP_171664613.1 PhzF family phenazine biosynthesis protein -
  HLG70_RS11985 (HLG70_11985) - 2670600..2672189 (-) 1590 WP_171664614.1 sulfatase-like hydrolase/transferase -
  HLG70_RS11990 (HLG70_11990) - 2672186..2673145 (-) 960 WP_171664615.1 tripartite tricarboxylate transporter substrate binding protein -
  HLG70_RS11995 (HLG70_11995) - 2673371..2674300 (+) 930 WP_234103071.1 LysR family transcriptional regulator -
  HLG70_RS12000 (HLG70_12000) - 2674336..2675577 (-) 1242 WP_171664616.1 hypothetical protein -
  HLG70_RS12010 (HLG70_12010) - 2676065..2676499 (-) 435 WP_171664617.1 MerR family transcriptional regulator -
  HLG70_RS12015 (HLG70_12015) - 2676558..2676896 (-) 339 WP_171664618.1 integration host factor subunit alpha -
  HLG70_RS12020 (HLG70_12020) pheT 2676900..2679317 (-) 2418 WP_171664619.1 phenylalanine--tRNA ligase subunit beta -
  HLG70_RS12025 (HLG70_12025) pheS 2679331..2680353 (-) 1023 WP_171664620.1 phenylalanine--tRNA ligase subunit alpha -
  HLG70_RS12030 (HLG70_12030) rplT 2680431..2680790 (-) 360 WP_006218741.1 50S ribosomal protein L20 -
  HLG70_RS12035 (HLG70_12035) rpmI 2680808..2681005 (-) 198 WP_006226956.1 50S ribosomal protein L35 -
  HLG70_RS12040 (HLG70_12040) comM 2681370..2682896 (-) 1527 WP_171664621.1 YifB family Mg chelatase-like AAA ATPase Machinery gene

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 52759.05 Da        Isoelectric Point: 8.5230

>NTDB_id=564409 HLG70_RS12040 WP_171664621.1 2681370..2682896(-) (comM) [Achromobacter deleyi strain As-55]
MTLAVLASRALCGMHAHAVRVETHLGAGLPSFNVVGLADTEVRESRERVRAAIINSGFEFPAGRITVNLSPADIPKESGR
FDLPIALGLLLASGQLTASADGVAGQAAPDPALVQLVLAGELSLTGALVPVAAPLVIALGVARDAPDATLILPAGSAEQA
AWVPGLRVLSARSLADVAAHAAGVCLLPNAVPRPWPEAAPVPCLSDVRGQPGARRALEVAAAGGHSLLMVGPPGAGKSML
AARLPGLLPPLERSQALEAAAVAAMAGVPDGLMGQPPFRAPHHSASVAALVGGGGRPRPGEISLAHHGVLFLDEFPEFSR
RTLEALREPLEAGRVVISRALQTVQFPARFQLVAAMNPCPCGWRGHPARACGCTPDQVARYVGKVSGPLLDRIDLHVALP
PSDPECMNGPPGEASEPVRARVMRCRERQQARQGKPNAGLAGAELDRFCVMDGDARSLLLQAMRRLAGSARAMHRALRVA
RTIADLDGEDVLAARHVAQAVQYRRPGV

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=564409 HLG70_RS12040 WP_171664621.1 2681370..2682896(-) (comM) [Achromobacter deleyi strain As-55]
TTGACGCTTGCCGTTCTAGCCAGCAGGGCCCTCTGCGGCATGCACGCCCATGCGGTTCGCGTCGAGACGCATCTGGGGGC
CGGCCTGCCCAGCTTCAATGTGGTCGGCCTGGCCGATACCGAAGTGAGGGAAAGCCGCGAGCGGGTCAGGGCGGCAATCA
TCAACAGCGGATTCGAGTTTCCGGCCGGCCGCATCACCGTCAATCTTTCGCCCGCCGATATTCCCAAGGAATCGGGCCGG
TTCGACCTGCCCATCGCTTTGGGGCTGTTGCTGGCTTCCGGACAGTTGACCGCTTCCGCCGACGGCGTTGCGGGGCAGGC
CGCGCCCGATCCCGCGCTGGTTCAACTGGTCCTGGCCGGCGAGCTCTCTTTGACTGGAGCCCTGGTGCCCGTCGCCGCGC
CGCTGGTCATCGCGTTGGGCGTTGCCCGGGACGCGCCCGACGCCACGCTGATCCTGCCCGCCGGCAGCGCCGAACAGGCC
GCCTGGGTGCCGGGCTTGCGGGTGTTGTCGGCTCGCAGCCTGGCTGATGTCGCCGCCCATGCGGCCGGCGTCTGCCTGTT
GCCAAACGCGGTGCCCAGGCCCTGGCCCGAGGCGGCGCCGGTTCCCTGCCTGTCGGACGTGCGGGGGCAGCCCGGCGCGC
GGCGGGCCCTGGAAGTGGCGGCGGCGGGCGGCCATAGCCTGCTGATGGTGGGGCCGCCGGGCGCGGGCAAGAGCATGCTT
GCCGCCCGCCTGCCGGGCCTGTTGCCGCCGCTGGAGCGCAGCCAGGCGCTGGAGGCCGCGGCGGTGGCGGCGATGGCCGG
TGTGCCCGATGGGCTGATGGGCCAGCCGCCGTTCCGGGCGCCGCACCATTCGGCCTCCGTGGCGGCCCTGGTGGGCGGGG
GCGGGCGGCCGCGCCCGGGCGAGATCAGCCTGGCGCATCACGGGGTGCTGTTCCTGGATGAATTTCCTGAGTTCAGCCGT
CGCACGCTGGAAGCGCTGCGCGAACCGCTGGAGGCGGGCAGGGTGGTCATCTCGCGGGCTTTGCAGACCGTGCAGTTTCC
GGCGCGGTTCCAACTGGTCGCCGCCATGAATCCCTGCCCCTGCGGCTGGCGCGGCCATCCCGCGCGCGCCTGCGGCTGCA
CGCCCGACCAGGTGGCACGCTATGTCGGCAAGGTCTCCGGCCCCTTGCTGGACCGTATTGATCTGCACGTGGCTCTGCCG
CCATCCGACCCCGAATGCATGAACGGTCCGCCGGGCGAGGCGTCGGAACCCGTCCGGGCGCGTGTAATGCGCTGCCGTGA
ACGTCAGCAGGCGCGGCAGGGCAAGCCCAATGCCGGTCTGGCCGGGGCGGAACTGGATCGGTTCTGCGTCATGGATGGCG
ACGCCCGCTCCCTGCTGCTGCAGGCCATGCGCCGGCTGGCGGGGTCTGCCCGGGCCATGCACCGCGCGCTGCGAGTGGCG
CGCACGATCGCCGATCTTGACGGCGAGGACGTGCTTGCCGCCCGGCATGTCGCCCAGGCGGTGCAGTACCGGCGGCCGGG
AGTATGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(204-403)

Subunit ChlI of Mg-chelatase (ChlI)

(21-154)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(412-504)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

48.337

100

0.486
  comM Haemophilus influenzae Rd KW20

46.304

100

0.469
  comM Vibrio campbellii strain DS40M4

46.667

100

0.469
  comM Glaesserella parasuis strain SC1401

44.788

100

0.457
  comM Legionella pneumophila str. Paris

44.423

100

0.455
  comM Legionella pneumophila strain ERS1305867

44.423

100

0.455
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.085

100

0.429