Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   KHA79_RS01810 Genome accession   NZ_CP074364
Coordinates   410409..411929 (-) Length   506 a.a.
NCBI ID   WP_039006279.1    Uniprot ID   -
Organism   Xanthomonas translucens pv. cerealis strain CFBP 2541     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 405409..416929
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KHA79_RS01795 (KHA79_01800) - 406780..407613 (+) 834 WP_039006282.1 alpha/beta fold hydrolase -
  KHA79_RS01800 (KHA79_01805) - 408016..409104 (+) 1089 WP_235426423.1 lipocalin family protein -
  KHA79_RS01805 (KHA79_01810) - 409163..410260 (+) 1098 WP_039006280.1 lipocalin-like domain-containing protein -
  KHA79_RS01810 (KHA79_01815) comM 410409..411929 (-) 1521 WP_039006279.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  KHA79_RS01815 (KHA79_01820) ubiK 411943..412212 (-) 270 WP_009595755.1 ubiquinone biosynthesis accessory factor UbiK -
  KHA79_RS01820 (KHA79_01825) - 412389..412727 (+) 339 WP_003480503.1 P-II family nitrogen regulator -
  KHA79_RS01825 (KHA79_01830) - 413100..415124 (+) 2025 Protein_361 beta-N-acetylhexosaminidase family protein -
  KHA79_RS01830 (KHA79_01835) - 415248..415469 (-) 222 WP_039006278.1 hypothetical protein -
  KHA79_RS01835 (KHA79_01840) speE 415526..416377 (-) 852 WP_039006277.1 polyamine aminopropyltransferase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 53660.34 Da        Isoelectric Point: 8.7746

>NTDB_id=564277 KHA79_RS01810 WP_039006279.1 410409..411929(-) (comM) [Xanthomonas translucens pv. cerealis strain CFBP 2541]
MSLALVHSRARAGVLAPPVRVEVHLSGGLPATQIVGLPEAAVRESRDRVRAAILCAQYEFPARRITVNLAPADLPKDGGR
FDLPIALGILAAAGQLDPQTLGNYEFLGELALTGELRAVDGVLPAALAAAQAGRTLIVPAGNGPEAALAQHVQAFTARTL
LEVCALLNGTKTLPAAEALPAAVTPFPDLSDVRGQAQARRALEIAAAGHHHLLLIGSPGCGKTLLASRLPGILPEASEAE
ALEAAAIASVSGRGLDPARWRQRPYRSPHHTASAVSLVGGGTHPRPGEISLAHRGVLFLDELPEWNRHALEVLREPLESG
TVTVSRAARSAEFPARFQLVAAMNPCPCGWAGDASGRCRCSDDSIRRYRARISGPLLDRIDLHVDVPRLPPQALRANAAP
GESSANVRARVEQARQRQLARAGCPNGQLGHSETLRDCRLQPRDEALLEHAIDRLRLSARSLHRILRVARTIADLASSDA
IATAHLTEAIGYRHLDRGEAPLARSA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=564277 KHA79_RS01810 WP_039006279.1 410409..411929(-) (comM) [Xanthomonas translucens pv. cerealis strain CFBP 2541]
ATGAGCCTGGCGCTGGTGCACAGCCGTGCCCGCGCGGGGGTGCTTGCGCCTCCGGTTCGGGTCGAAGTCCATCTGTCCGG
CGGACTGCCGGCCACGCAGATCGTCGGCCTGCCCGAGGCCGCGGTACGCGAATCGCGCGACCGGGTGCGCGCCGCCATCC
TGTGCGCGCAATACGAATTCCCGGCGCGGCGCATCACCGTCAACCTGGCCCCGGCCGACCTGCCCAAGGACGGCGGCCGC
TTCGACCTGCCGATCGCGCTGGGCATCCTCGCCGCCGCCGGGCAACTCGACCCACAGACGTTGGGCAACTACGAATTCCT
CGGCGAACTGGCCTTGACCGGCGAGCTGCGCGCCGTGGACGGGGTGCTGCCGGCGGCACTGGCCGCCGCGCAAGCCGGAC
GCACGCTGATCGTGCCCGCCGGCAACGGCCCCGAAGCGGCGCTGGCGCAGCACGTGCAGGCGTTCACCGCGCGCACCCTG
CTCGAAGTCTGCGCACTGTTGAACGGCACCAAGACTCTGCCGGCCGCCGAAGCCCTGCCGGCCGCGGTCACGCCGTTTCC
CGACCTGAGCGACGTGCGCGGACAAGCGCAGGCGCGACGCGCCTTGGAAATCGCCGCTGCCGGCCACCACCACCTGCTGC
TGATCGGCAGCCCGGGCTGCGGCAAGACCCTGCTGGCTTCGCGCCTGCCCGGCATCCTGCCCGAAGCCAGCGAGGCCGAG
GCGCTGGAAGCGGCGGCGATCGCCTCGGTCAGCGGTCGCGGCCTGGACCCGGCGCGCTGGCGGCAACGCCCCTACCGATC
CCCGCACCACACCGCCAGCGCGGTGTCGCTGGTCGGCGGCGGCACCCATCCGCGCCCCGGCGAAATCTCGCTGGCGCATC
GCGGCGTGTTGTTCCTCGACGAGTTGCCCGAGTGGAACCGGCACGCGCTGGAAGTGCTGCGTGAGCCACTGGAATCGGGC
ACGGTCACCGTCTCGCGGGCCGCACGCAGCGCCGAGTTCCCGGCGCGCTTCCAGCTGGTCGCGGCGATGAACCCCTGCCC
CTGCGGCTGGGCCGGCGATGCCAGCGGCCGCTGCCGCTGCAGCGACGACAGCATCCGCCGCTACCGCGCACGCATCTCCG
GCCCCTTGCTGGACCGCATCGACCTGCATGTGGACGTGCCCCGGCTGCCGCCGCAGGCGTTGCGGGCCAATGCCGCTCCC
GGCGAAAGCAGCGCCAACGTGCGCGCCCGGGTGGAACAGGCGCGGCAACGCCAGCTGGCGCGCGCCGGCTGCCCCAACGG
CCAGCTCGGCCACAGCGAGACCCTGCGCGACTGCCGCCTGCAGCCGCGCGACGAAGCGCTGCTGGAACACGCCATCGACC
GCCTACGCCTGTCGGCACGCTCCCTGCACCGCATCCTGCGCGTGGCCCGCACCATCGCCGACCTGGCCAGCAGCGACGCG
ATCGCGACAGCGCACCTGACCGAAGCGATCGGTTACCGGCACCTGGACCGCGGTGAGGCGCCATTGGCGCGCAGCGCCTG
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(188-392)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.112

98.617

0.553
  comM Vibrio campbellii strain DS40M4

54.582

99.209

0.542
  comM Haemophilus influenzae Rd KW20

53.77

99.605

0.536
  comM Glaesserella parasuis strain SC1401

53.175

99.605

0.53
  comM Legionella pneumophila str. Paris

50.595

99.605

0.504
  comM Legionella pneumophila strain ERS1305867

50.595

99.605

0.504
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.576

100

0.447