Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   KFZ77_RS19170 Genome accession   NZ_CP074352
Coordinates   4013275..4014795 (+) Length   506 a.a.
NCBI ID   WP_264385085.1    Uniprot ID   -
Organism   Siccibacter colletis strain YSD YN2     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 4008275..4019795
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KFZ77_RS19150 (KFZ77_19130) - 4009823..4010752 (-) 930 WP_031523792.1 branched-chain amino acid transaminase -
  KFZ77_RS19155 (KFZ77_19135) ilvM 4010770..4011033 (-) 264 WP_031523794.1 acetolactate synthase 2 small subunit -
  KFZ77_RS19160 (KFZ77_19140) ilvG 4011030..4012679 (-) 1650 WP_264385084.1 acetolactate synthase 2 catalytic subunit -
  KFZ77_RS19165 (KFZ77_19145) ilvL 4012819..4012917 (-) 99 WP_072002048.1 ilv operon leader peptide -
  KFZ77_RS19170 (KFZ77_19150) comM 4013275..4014795 (+) 1521 WP_264385085.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  KFZ77_RS19175 (KFZ77_19155) - 4014820..4015158 (-) 339 WP_031523799.1 DUF413 domain-containing protein -
  KFZ77_RS19180 (KFZ77_19160) hdfR 4015278..4016102 (+) 825 WP_264385086.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54788.37 Da        Isoelectric Point: 7.4458

>NTDB_id=564177 KFZ77_RS19170 WP_264385085.1 4013275..4014795(+) (comM) [Siccibacter colletis strain YSD YN2]
MSLAIVFTRAALGVTAPLVTVEVHMSAGLPGLTIVGLPETTVKEARDRVRSAIINSGYEFPARKITINLAPADLPKEGGR
YDLPIAVALLAASEQLSTSLLSQTEFVGELALTGALRGVPGAISCAMEALQQQRQIVVAQENASELGLIDKPGCMVAAHL
LEVCAFLEGKGSLERPVSPALSTEACCEDINEVYGQQQGKRALEIAAAGGHNLLFIGPPGTGKTMLASRLNGILPPLSDE
EALESAAIMSLVNPVALQRQWRQRPFRAPHHSASLTALVGGGAIPMPGEISLAHNGVLFLDELPEFERRALDALREPVES
GKVHISRTRAKVSYPARFQLIAAMNPSPTGHYQGNHNRCSPEQTLRYLGRLSGPFLDRFDLSLEIPLLPPGMLSKPGDGG
ESSAEIRLRVTKVRSKQLARQQCLNALLDNAGIKQFCRLEAADAEWLEETLIRLGLSVRAWQRLLKVARTIADLNLEGDI
RRPHLQEALSYRAIDRMLLHLQKMMT

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=564177 KFZ77_RS19170 WP_264385085.1 4013275..4014795(+) (comM) [Siccibacter colletis strain YSD YN2]
ATGTCTCTCGCCATTGTGTTTACCAGAGCTGCGTTGGGCGTAACGGCCCCACTGGTTACCGTTGAAGTACATATGAGTGC
AGGTTTGCCGGGCCTGACTATTGTTGGCCTGCCTGAGACGACTGTAAAGGAAGCGCGCGATCGTGTGCGTAGCGCCATTA
TCAACAGTGGTTATGAATTCCCGGCCCGTAAAATCACCATCAACCTCGCGCCGGCCGATTTACCTAAAGAGGGCGGGCGT
TACGATTTGCCCATCGCTGTCGCGTTACTGGCCGCCTCGGAGCAGCTCAGCACCTCACTGTTAAGCCAGACAGAGTTTGT
CGGTGAGCTGGCGCTTACCGGCGCGTTGCGCGGCGTTCCCGGTGCGATCTCATGTGCCATGGAGGCACTCCAGCAACAGC
GGCAGATCGTTGTCGCTCAGGAAAACGCATCGGAACTGGGCCTGATTGATAAACCCGGCTGTATGGTTGCAGCACATCTG
CTGGAGGTATGCGCGTTTCTTGAAGGCAAAGGCTCACTTGAGAGGCCGGTTTCCCCAGCGCTGAGCACTGAAGCGTGTTG
TGAAGATATCAATGAAGTGTATGGGCAACAACAAGGCAAGCGAGCCCTGGAGATTGCAGCCGCTGGCGGTCATAACCTGC
TCTTTATTGGTCCTCCCGGCACCGGTAAAACAATGCTGGCGAGTCGGCTTAACGGGATCTTGCCACCATTGAGCGATGAA
GAGGCGCTTGAGAGCGCCGCCATCATGAGTCTGGTGAATCCGGTCGCGTTACAGCGGCAATGGCGTCAACGGCCATTCAG
AGCACCTCACCACAGCGCATCGTTGACGGCTCTGGTAGGCGGTGGAGCTATTCCCATGCCCGGAGAGATTTCACTGGCGC
ACAATGGCGTGCTGTTTCTGGATGAGTTACCGGAGTTTGAGCGCCGGGCTTTGGATGCATTAAGAGAGCCCGTCGAGTCA
GGGAAAGTTCATATTTCACGCACGCGCGCAAAAGTCAGCTATCCCGCGCGCTTCCAACTCATTGCCGCAATGAATCCCAG
TCCAACAGGGCACTATCAGGGAAATCATAATCGTTGCAGCCCTGAACAGACTCTGCGTTACCTTGGGCGTCTGTCCGGAC
CCTTTTTGGATCGGTTCGATTTATCCCTTGAGATCCCTCTGCTACCGCCTGGGATGTTAAGTAAGCCGGGCGACGGGGGG
GAAAGTAGCGCTGAAATCAGGTTGCGGGTAACAAAGGTGCGTTCAAAGCAACTTGCACGCCAGCAGTGCCTTAATGCTTT
GCTCGACAATGCCGGAATCAAGCAATTCTGTCGCCTTGAAGCTGCCGACGCCGAGTGGCTTGAAGAGACGCTCATCCGTC
TTGGATTATCAGTCAGAGCCTGGCAGCGATTACTTAAGGTAGCGCGTACTATTGCCGATCTTAATCTGGAAGGTGATATA
CGTCGCCCTCACCTGCAGGAAGCGCTGAGTTACCGCGCGATTGACAGAATGCTGCTCCACCTGCAAAAGATGATGACGTA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-388)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

59.687

100

0.603
  comM Vibrio cholerae strain A1552

60.558

99.209

0.601
  comM Glaesserella parasuis strain SC1401

59.136

100

0.595
  comM Vibrio campbellii strain DS40M4

59.363

99.209

0.589
  comM Legionella pneumophila str. Paris

50.302

98.221

0.494
  comM Legionella pneumophila strain ERS1305867

50.302

98.221

0.494
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.393

100

0.435