Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   KFZ77_RS17660 Genome accession   NZ_CP074352
Coordinates   3688959..3689501 (-) Length   180 a.a.
NCBI ID   WP_031521413.1    Uniprot ID   -
Organism   Siccibacter colletis strain YSD YN2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3683959..3694501
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KFZ77_RS17635 (KFZ77_17620) - 3684868..3685536 (-) 669 WP_031521421.1 glutathione S-transferase family protein -
  KFZ77_RS17640 (KFZ77_17625) soxR 3685640..3686095 (-) 456 WP_031521419.1 redox-sensitive transcriptional activator SoxR -
  KFZ77_RS17645 (KFZ77_17630) soxS 3686180..3686503 (+) 324 WP_031521418.1 superoxide response transcriptional regulator SoxS -
  KFZ77_RS17650 (KFZ77_17635) - 3686512..3688101 (-) 1590 WP_264384933.1 EAL domain-containing protein -
  KFZ77_RS17655 (KFZ77_17640) - 3688580..3688855 (+) 276 WP_264384934.1 YjcB family protein -
  KFZ77_RS17660 (KFZ77_17645) ssb 3688959..3689501 (-) 543 WP_031521413.1 single-stranded DNA-binding protein SSB1 Machinery gene
  KFZ77_RS17665 (KFZ77_17650) uvrA 3689812..3692640 (+) 2829 WP_264384935.1 excinuclease ABC subunit UvrA -
  KFZ77_RS17670 (KFZ77_17655) - 3692668..3693021 (-) 354 WP_031521409.1 MmcQ/YjbR family DNA-binding protein -
  KFZ77_RS17675 (KFZ77_17660) - 3693018..3693440 (-) 423 WP_264384936.1 secondary thiamine-phosphate synthase enzyme YjbQ -

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 19193.20 Da        Isoelectric Point: 5.2456

>NTDB_id=564173 KFZ77_RS17660 WP_031521413.1 3688959..3689501(-) (ssb) [Siccibacter colletis strain YSD YN2]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKQTGETKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGSLQTRKWTDQAGVEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGMGGGQQQQGGWGQPQQPQGGNQFSGGAQSRPQQQ
NNAPAQSNEPPMDFDDDIPF

Nucleotide


Download         Length: 543 bp        

>NTDB_id=564173 KFZ77_RS17660 WP_031521413.1 3688959..3689501(-) (ssb) [Siccibacter colletis strain YSD YN2]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGGAATCTGGGTCAGGACCCGGAAGTGCGCTATATGCCGAATGG
TGGCGCAGTTGCCAACATTACCCTGGCCACGTCAGAGTCATGGCGCGACAAACAAACCGGCGAAACCAAAGAGAAAACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAGCTGGCTGAAGTGGCCGGTGAATACCTGCGCAAAGGTTCTCAGGTTTATATC
GAAGGTTCCCTGCAGACCCGCAAATGGACCGACCAGGCCGGTGTTGAGAAGTACACCACGGAAGTCGTGGTTAACGTTGG
CGGCACCATGCAGATGCTGGGTGGCCGTCAGGGCGGCGGTGCACCGGCTGGCGGCGGCATGGGCGGCGGTCAGCAGCAGC
AGGGCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGCGGCAACCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGCAG
AACAATGCCCCAGCGCAGTCTAACGAACCGCCGATGGATTTCGATGACGACATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.176

100

0.75
  ssb Glaesserella parasuis strain SC1401

56.216

100

0.578
  ssb Neisseria meningitidis MC58

46.703

100

0.472
  ssb Neisseria gonorrhoeae MS11

46.703

100

0.472
  ssbA Bacillus subtilis subsp. subtilis str. 168

36.667

100

0.367