Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   KFZ74_RS18025 Genome accession   NZ_CP074350
Coordinates   3824658..3825200 (-) Length   180 a.a.
NCBI ID   WP_021507842.1    Uniprot ID   -
Organism   Pantoea dispersa strain YSD_J2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3819658..3830200
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KFZ74_RS18005 (KFZ74_17975) - 3820737..3821132 (+) 396 WP_031279757.1 transposase -
  KFZ74_RS18010 (KFZ74_17980) - 3822041..3822994 (-) 954 WP_104093916.1 DMT family transporter -
  KFZ74_RS18015 (KFZ74_17985) - 3823067..3823897 (-) 831 WP_238561252.1 AraC family transcriptional regulator -
  KFZ74_RS18020 (KFZ74_17990) - 3824024..3824551 (+) 528 WP_238561253.1 isochorismatase family protein -
  KFZ74_RS18025 (KFZ74_17995) ssb 3824658..3825200 (-) 543 WP_021507842.1 single-stranded DNA-binding protein SSB1 Machinery gene
  KFZ74_RS18030 (KFZ74_18000) uvrA 3825422..3828250 (+) 2829 WP_238561254.1 excinuclease ABC subunit UvrA -
  KFZ74_RS18035 (KFZ74_18005) - 3828526..3829590 (+) 1065 WP_150360494.1 NAD(P)-dependent alcohol dehydrogenase -
  KFZ74_RS18040 (KFZ74_18010) - 3829591..3829947 (-) 357 WP_021507845.1 MmcQ/YjbR family DNA-binding protein -

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 19303.24 Da        Isoelectric Point: 5.2358

>NTDB_id=564154 KFZ74_RS18025 WP_021507842.1 3824658..3825200(-) (ssb) [Pantoea dispersa strain YSD_J2]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKQTGENKEITEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWQDQSGQDKYTTEVVVNVGGTMQMLGGRQQGGNGGGAPMGGQGGGNNNGWGQPQQPQGGGNQFSGGAQQRPQ
QQSAPANNEPPMDFDDDIPF

Nucleotide


Download         Length: 543 bp        

>NTDB_id=564154 KFZ74_RS18025 WP_021507842.1 3824658..3825200(-) (ssb) [Pantoea dispersa strain YSD_J2]
ATGGCCAGTCGTGGCGTAAACAAAGTGATTCTTGTCGGGAATCTGGGTCAGGATCCGGAAGTGCGCTACATGCCGAATGG
TGGCGCGGTAGCCAACATTACGCTGGCCACGTCAGAGAGCTGGCGCGACAAGCAAACCGGTGAAAACAAAGAGATCACCG
AATGGCACCGCGTCGTGCTGTTCGGCAAGCTGGCTGAAGTCGCCGGCGAATATCTGCGTAAAGGTTCGCAGGTCTACATT
GAAGGCCAGCTGCGCACCCGTAAATGGCAGGACCAGAGCGGCCAGGACAAATACACCACCGAAGTGGTGGTTAACGTGGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGCAGGGCGGCAACGGCGGTGGCGCACCGATGGGCGGCCAGGGCGGCGGCA
ACAATAACGGCTGGGGCCAGCCGCAGCAGCCGCAGGGTGGGGGCAACCAGTTCAGCGGCGGCGCGCAGCAGCGTCCACAG
CAGCAGAGCGCACCGGCGAACAACGAACCACCAATGGATTTCGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

73.118

100

0.756
  ssb Glaesserella parasuis strain SC1401

58.378

100

0.6
  ssb Neisseria meningitidis MC58

45

100

0.45
  ssb Neisseria gonorrhoeae MS11

45

100

0.45
  ssbA Bacillus subtilis subsp. subtilis str. 168

37.222

100

0.372