Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   KFZ74_RS00620 Genome accession   NZ_CP074350
Coordinates   129417..130937 (-) Length   506 a.a.
NCBI ID   WP_058780245.1    Uniprot ID   -
Organism   Pantoea dispersa strain YSD_J2     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 124417..135937
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KFZ74_RS00610 (KFZ74_00610) hdfR 128107..128928 (-) 822 WP_031279770.1 HTH-type transcriptional regulator HdfR -
  KFZ74_RS00615 (KFZ74_00615) - 129050..129388 (+) 339 WP_021507919.1 DUF413 domain-containing protein -
  KFZ74_RS00620 (KFZ74_00620) comM 129417..130937 (-) 1521 WP_058780245.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  KFZ74_RS00625 (KFZ74_00625) ilvL 131266..131364 (+) 99 WP_071813600.1 ilv operon leader peptide -
  KFZ74_RS00630 (KFZ74_00630) ilvG 131514..133160 (+) 1647 WP_021507917.1 acetolactate synthase 2 catalytic subunit -
  KFZ74_RS00635 (KFZ74_00635) ilvM 133157..133414 (+) 258 WP_008106624.1 acetolactate synthase 2 small subunit -
  KFZ74_RS00640 (KFZ74_00640) - 133433..134362 (+) 930 WP_021507916.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54941.14 Da        Isoelectric Point: 7.8673

>NTDB_id=564138 KFZ74_RS00620 WP_058780245.1 129417..130937(-) (comM) [Pantoea dispersa strain YSD_J2]
MSLSKVLTRAALGVQAPLVTIEVHISNGLPALTLVGLPETTVKEARERVRSAIINSGFTFPAKRVTINLAPADLPKEGGR
YDLPIAIAILAASEQLPGDKLAHYEFLGELALNGALCGVQAAIPAAMAALQAGRQMVLAEQNQQDVGLIQQGETLVGKHL
VEICAFLHNQTALTVAHYQPETVPHEQQDLSDIIGQQQGRRALEITAAGGHNLLLLGPPGTGKTMLATRLPGIMPPLDDQ
EALECAAIASLVSSGTLHHQWRRRPFRAPHHSASLYALVGGGSLPRPGEISLAHNGVLFLDELPEFERKALDALREPIES
GEIAISRSRAKVTFPARFQLIGAMNPSPTGHYQGNHNRCTPQQVLRYLSRLSGPFLDRFDLSLEIPLLPGGSLSQKQQHS
ETSAQVRARVLAARAIQMARAGKVNAQLSNPEIARDCVLQQQDAEWLEEILNALGLSVRAWQRILKVARTIADLAGERQV
TRQHLQEAVGYRSIDRLLIYLHKSLE

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=564138 KFZ74_RS00620 WP_058780245.1 129417..130937(-) (comM) [Pantoea dispersa strain YSD_J2]
ATGTCTTTATCGAAAGTATTAACACGCGCGGCGCTCGGAGTGCAGGCTCCACTGGTGACGATTGAAGTGCATATCAGCAA
CGGTCTGCCAGCATTGACACTGGTTGGTCTGCCGGAAACTACCGTCAAAGAAGCCCGCGAACGCGTGCGCAGCGCCATTA
TCAATAGCGGTTTCACCTTTCCGGCGAAGCGCGTCACCATTAATCTCGCGCCAGCTGATTTACCTAAAGAGGGTGGGCGC
TACGACCTGCCGATCGCTATCGCCATTCTCGCGGCCTCAGAGCAGCTGCCAGGCGATAAGCTGGCCCATTATGAGTTCCT
GGGTGAGCTGGCGCTAAACGGCGCGCTGTGTGGCGTTCAGGCCGCGATTCCTGCTGCCATGGCGGCACTGCAGGCCGGAC
GTCAGATGGTCTTAGCGGAGCAGAATCAACAGGATGTCGGCCTGATACAACAGGGCGAAACGCTTGTGGGCAAGCATCTG
GTGGAGATCTGCGCTTTCCTGCATAACCAGACGGCGCTGACGGTCGCCCATTACCAGCCTGAAACGGTGCCGCACGAGCA
GCAGGACCTGAGCGATATTATTGGCCAGCAGCAGGGACGGCGCGCGCTGGAAATCACCGCCGCCGGTGGCCATAACCTGT
TGCTGCTGGGCCCGCCCGGTACCGGTAAAACCATGCTGGCAACCCGATTGCCCGGCATTATGCCGCCGCTGGACGACCAG
GAGGCGCTGGAGTGCGCCGCGATTGCCAGCCTGGTCAGCAGCGGTACGCTACATCATCAGTGGCGTAGACGGCCGTTCAG
AGCGCCTCATCACAGCGCATCGCTGTATGCGCTGGTCGGCGGAGGATCACTGCCGCGGCCGGGCGAAATTTCGCTGGCGC
ACAACGGGGTGCTGTTTCTAGATGAACTGCCCGAGTTTGAGCGCAAAGCGCTGGATGCGTTACGCGAGCCGATTGAGTCC
GGTGAAATCGCCATTTCCCGTTCCCGCGCCAAAGTCACTTTCCCTGCACGCTTTCAACTGATTGGTGCAATGAATCCCAG
CCCGACGGGTCATTATCAGGGAAATCATAATCGCTGCACGCCGCAGCAGGTGCTGCGCTATCTTAGCCGGCTGTCTGGTC
CGTTTCTGGATCGCTTCGACCTGTCGCTGGAGATTCCGCTGCTACCGGGCGGCTCGCTCAGCCAGAAGCAGCAGCACAGC
GAAACCAGCGCGCAGGTGCGCGCACGTGTACTGGCCGCCCGGGCGATACAGATGGCACGCGCGGGCAAGGTGAATGCGCA
GCTGTCGAATCCGGAGATCGCCCGTGATTGTGTGTTACAGCAGCAGGACGCGGAATGGCTGGAGGAGATCCTGAATGCAT
TGGGATTATCGGTGCGTGCGTGGCAGCGCATCTTAAAGGTGGCGAGAACCATCGCAGATTTAGCGGGTGAACGGCAGGTT
ACGCGTCAGCATCTGCAGGAGGCGGTGGGATATCGCAGTATCGATCGTTTACTGATTTACCTGCATAAAAGCCTGGAATG
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-388)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

62.227

99.407

0.619
  comM Glaesserella parasuis strain SC1401

61.829

99.407

0.615
  comM Vibrio cholerae strain A1552

61.355

99.209

0.609
  comM Vibrio campbellii strain DS40M4

60.558

99.209

0.601
  comM Legionella pneumophila str. Paris

48.29

98.221

0.474
  comM Legionella pneumophila strain ERS1305867

48.29

98.221

0.474
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.083

100

0.431