Detailed information NTG0564110

Bioinformatically predicted

Overview

• Name: comM
• Type: Machinery gene
• Locus tag: KGD89_RS00900
• Genome accession: NZ_CP074349
• Coordinates: 192247..193740 (-)
• Length: 497 a.a.
• NCBI ID: WP_025257947.1
• Uniprot ID: -
• Organism: Pseudomonas cichorii strain DSM 50259
• Function: ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 187247..198740

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KGD89_RS00885 (KGD89_00885)	-	188597..189517 (+)	921	WP_025257944.1	LysR substrate-binding domain-containing protein	-
KGD89_RS26275	-	189845..190780 (+)	936	Protein_181	Cache 3/Cache 2 fusion domain-containing protein	-
KGD89_RS26280	-	190961..191683 (+)	723	WP_374004995.1	methyl-accepting chemotaxis protein	-
KGD89_RS00895 (KGD89_00895)	-	191863..192120 (-)	258	WP_236250093.1	hypothetical protein	-
KGD89_RS00900 (KGD89_00900)	comM	192247..193740 (-)	1494	WP_025257947.1	YifB family Mg chelatase-like AAA ATPase	Machinery gene
KGD89_RS00905 (KGD89_00905)	-	193917..194648 (-)	732	WP_143008712.1	hypothetical protein	-
KGD89_RS00910 (KGD89_00910)	-	194662..194865 (-)	204	WP_025257949.1	hypothetical protein	-
KGD89_RS00915 (KGD89_00915)	-	195588..196130 (+)	543	WP_025257950.1	hypothetical protein	-
KGD89_RS00920 (KGD89_00920)	-	196157..197131 (-)	975	WP_025257951.1	hypothetical protein	-
KGD89_RS00925 (KGD89_00925)	-	197157..197423 (-)	267	WP_025257952.1	accessory factor UbiK family protein	-
KGD89_RS00930 (KGD89_00930)	glnK	197845..198183 (+)	339	WP_002555808.1	P-II family nitrogen regulator	-

Sequence

Protein

• Length: 497 a.a.
• Molecular weight: 53034.85 Da
• Isoelectric Point: 7.5081

>NTDB_id=564110 KGD89_RS00900 WP_025257947.1 192247..193740(-) (comM) [Pseudomonas cichorii strain DSM 50259]
MSLAIVHSRAQVGVEAPAVTVEAHLANGLPTLTLVGLPEGAVKESKDRVRSAILNSGLDFPARRITLNLAPADLPKDGGR
FDLAIALGLLGASGQLPLLALQDVECLGELALSGAIRPVQGVLPAALAARAAERTLIVPAANAEEACLASGLRVIAVSHL
LELVAHFNGRTPIQPYQSSGLLHQPKPYPDLSEVQGQTAAKRALVVAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLDE
YEALEVAAIQSVASQVPLSSWPQRPFRQPHHSASGPALVGGGSRPQPGEITLAHHGILFLDELPEFDRRVLEVLREPLES
GHIVISRARDRVRFPARFQLVAAMNPCPCGYMGEPTGRCRCSTEQIQRYRNKLSGPLLDRIDLHLTVAREATALNPAPQT
GDDTASAAALVAKARDRQQRRQGCANAFLDLPGLREHCALSAADETWLETACERLALSLRAAHRLLKVARTLADLEQEDA
IDRRHLAEALQYRPASN

Nucleotide

• Length: 1494 bp

>NTDB_id=564110 KGD89_RS00900 WP_025257947.1 192247..193740(-) (comM) [Pseudomonas cichorii strain DSM 50259]
ATGTCTCTCGCCATCGTCCACAGCCGCGCCCAGGTGGGTGTGGAAGCACCTGCCGTTACTGTCGAAGCCCATCTGGCCAA
CGGCCTGCCGACCCTGACGCTGGTCGGTTTGCCGGAAGGTGCGGTCAAGGAAAGCAAGGATCGGGTGCGTAGCGCCATTC
TCAATTCGGGGCTGGATTTCCCGGCGCGGCGGATCACGCTCAATCTGGCTCCGGCGGATTTGCCGAAGGATGGTGGCCGT
TTTGATCTGGCCATTGCGCTGGGTTTGCTGGGGGCCAGTGGGCAGTTGCCGTTATTGGCGTTACAGGATGTGGAATGTCT
GGGCGAGCTGGCATTGTCGGGGGCGATTCGGCCGGTTCAGGGGGTGTTGCCTGCTGCGCTGGCGGCGCGGGCGGCAGAAC
GTACGCTGATCGTGCCGGCGGCCAATGCCGAAGAAGCATGCCTGGCTTCGGGGTTGCGGGTCATTGCGGTGAGTCATTTG
CTGGAGCTGGTCGCACATTTCAATGGGCGCACGCCTATCCAGCCTTATCAGAGCAGCGGGCTTTTGCATCAGCCCAAGCC
TTACCCGGATTTGAGCGAAGTTCAGGGCCAGACCGCCGCCAAGCGCGCCTTGGTGGTTGCAGCGGCCGGTGCGCATAACC
TGCTTTTCAGCGGCCCGCCGGGCACGGGCAAAACCTTGCTGGCCAGTCGCTTGCCGGGGTTGTTGCCGCCGCTGGATGAG
TACGAAGCGCTGGAGGTGGCGGCGATTCAGTCGGTGGCCAGTCAGGTGCCGCTGAGCAGTTGGCCGCAACGACCTTTCCG
TCAACCTCATCACTCTGCTTCGGGGCCGGCATTGGTGGGCGGTGGCAGTCGCCCTCAACCTGGCGAGATAACATTGGCTC
ATCACGGCATTTTATTTTTAGATGAATTACCCGAGTTCGATCGTCGCGTTCTGGAGGTTTTGCGCGAGCCGCTGGAGTCT
GGCCATATCGTGATTTCCCGGGCGCGGGATCGGGTGCGGTTCCCGGCGCGCTTTCAACTGGTCGCAGCCATGAACCCTTG
CCCGTGCGGTTATATGGGTGAGCCCACCGGGCGGTGCCGTTGTTCGACCGAGCAGATCCAGCGTTATCGCAACAAGCTGT
CCGGGCCGTTGCTGGACCGGATCGATCTGCACCTGACTGTCGCTCGCGAAGCCACTGCCCTCAACCCGGCACCGCAAACC
GGCGACGACACCGCCAGCGCCGCCGCGTTGGTCGCAAAAGCCCGTGATCGCCAGCAAAGACGCCAAGGCTGCGCCAATGC
CTTCCTCGATTTGCCGGGGTTGCGTGAGCATTGTGCGTTGTCGGCGGCGGATGAAACCTGGCTGGAAACGGCCTGCGAGC
GATTGGCCCTGTCGTTGCGGGCCGCGCACCGGTTGCTGAAAGTGGCAAGAACCCTGGCGGATCTGGAGCAGGAGGATGCG
ATTGATCGTCGCCATCTGGCCGAAGCGTTGCAGTATCGGCCTGCGAGTAATTGA

Domains

Predicted by InterproScan.

• Magnesium chelatase, subunit ChlI (Mg_chelatase) (190-390)

• Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C) (403-493)

• Subunit ChlI of Mg-chelatase (ChlI) (21-142)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comM	Vibrio cholerae strain A1552	55.354	99.598	0.551
comM	Glaesserella parasuis strain SC1401	54	100	0.543
comM	Vibrio campbellii strain DS40M4	54.545	99.598	0.543
comM	Haemophilus influenzae Rd KW20	53.4	100	0.537
comM	Legionella pneumophila str. Paris	48.996	100	0.491
comM	Legionella pneumophila strain ERS1305867	48.996	100	0.491
RA0C_RS07335	Riemerella anatipestifer ATCC 11845 = DSM 15868	45.618	100	0.461