Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   BAM5036_RS11445 Genome accession   NC_020410
Coordinates   2423372..2424442 (-) Length   356 a.a.
NCBI ID   WP_003153083.1    Uniprot ID   -
Organism   Bacillus velezensis UCMB5036     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2418372..2429442
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAM5036_RS11395 (BAM5036_2217) sipW 2418432..2419016 (-) 585 WP_015240205.1 signal peptidase I SipW -
  BAM5036_RS11400 (BAM5036_2218) tapA 2418988..2419659 (-) 672 WP_015417813.1 amyloid fiber anchoring/assembly protein TapA -
  BAM5036_RS11405 (BAM5036_2220) - 2419918..2420247 (+) 330 WP_012117979.1 DUF3889 domain-containing protein -
  BAM5036_RS11410 (BAM5036_2221) - 2420287..2420466 (-) 180 WP_003153093.1 YqzE family protein -
  BAM5036_RS11415 (BAM5036_2222) comGG 2420523..2420900 (-) 378 WP_015417814.1 competence type IV pilus minor pilin ComGG Machinery gene
  BAM5036_RS11420 (BAM5036_2223) comGF 2420901..2421401 (-) 501 WP_258548905.1 competence type IV pilus minor pilin ComGF -
  BAM5036_RS11425 (BAM5036_2224) comGE 2421310..2421624 (-) 315 WP_031378943.1 competence type IV pilus minor pilin ComGE -
  BAM5036_RS11430 (BAM5036_2225) comGD 2421608..2422045 (-) 438 WP_015417817.1 competence type IV pilus minor pilin ComGD Machinery gene
  BAM5036_RS11435 (BAM5036_2226) comGC 2422035..2422301 (-) 267 WP_050515801.1 competence type IV pilus major pilin ComGC Machinery gene
  BAM5036_RS11440 (BAM5036_2227) comGB 2422348..2423385 (-) 1038 WP_015417819.1 competence type IV pilus assembly protein ComGB Machinery gene
  BAM5036_RS11445 (BAM5036_2228) comGA 2423372..2424442 (-) 1071 WP_003153083.1 competence type IV pilus ATPase ComGA Machinery gene
  BAM5036_RS11450 (BAM5036_2229) - 2424635..2425585 (-) 951 WP_015417820.1 magnesium transporter CorA family protein -
  BAM5036_RS11455 (BAM5036_2230) - 2425731..2427032 (+) 1302 WP_012117986.1 hemolysin family protein -
  BAM5036_RS11460 (BAM5036_2231) - 2427070..2427900 (-) 831 WP_015417821.1 STAS domain-containing protein -
  BAM5036_RS11470 (BAM5036_2232) - 2428107..2428487 (-) 381 WP_003153079.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  BAM5036_RS11475 (BAM5036_2233) - 2428724..2428969 (+) 246 WP_003153078.1 DUF2626 domain-containing protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 40529.85 Da        Isoelectric Point: 9.4729

>NTDB_id=56383 BAM5036_RS11445 WP_003153083.1 2423372..2424442(-) (comGA) [Bacillus velezensis UCMB5036]
MKNIETYSRNIINEAYTARASDIHIVPREKDAFIHFRIGHALVKKRVLKKEECVRLISHFKFLSAMDIGERRKPQNGSLS
LPLPTETVHLRMSTLPTMNDESLVIRLLPKRQIPPLDKLSLFRGAGAALLSFLKHSHGLLLFTGPTGSGKTTTLYSLVNY
AKRHFNRRIVTLEDPVETRDEDVLQVQVNEKAGVTYSAGLKAILRHDPDMIILGEIRDAETAEIAVRAAMTGHLVLSSLH
TRDAKGAIYRLLEFGVNMTEIEQTVIAIAAQRLVDLTCPFCKEENCSVYCRMYRQTRRAGIYELLYGKNLTQCFQEAKGE
HANFQYQTLRRLIRKGIALGYVTTDNYDRWVYHEAD

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=56383 BAM5036_RS11445 WP_003153083.1 2423372..2424442(-) (comGA) [Bacillus velezensis UCMB5036]
GTGAAAAATATTGAAACATATAGCAGGAACATCATAAACGAGGCCTATACGGCAAGGGCTTCAGATATACACATTGTGCC
GAGAGAAAAGGATGCTTTCATTCATTTTCGCATCGGCCATGCTCTTGTGAAAAAAAGAGTCTTAAAAAAAGAGGAATGCG
TAAGGCTTATTTCTCATTTTAAGTTTTTATCGGCCATGGATATAGGAGAAAGACGTAAGCCGCAAAACGGGTCATTGTCT
CTGCCGCTTCCGACGGAAACCGTTCATTTGAGAATGTCAACCTTGCCGACAATGAATGATGAAAGTCTTGTCATCAGGCT
TTTGCCTAAGCGGCAGATTCCCCCTCTGGATAAACTGTCCTTATTTCGGGGGGCGGGCGCCGCACTATTGTCCTTTCTGA
AGCATTCGCACGGCCTGCTTCTGTTTACCGGCCCCACCGGATCTGGAAAAACGACCACTCTTTACTCGCTTGTCAACTAT
GCAAAAAGGCATTTCAACCGGCGGATTGTCACGCTTGAAGACCCCGTAGAAACAAGAGATGAGGATGTGCTGCAAGTTCA
GGTGAATGAAAAAGCCGGAGTCACATATTCCGCCGGTTTAAAAGCGATTTTAAGACATGATCCCGATATGATCATTTTAG
GGGAAATCAGAGATGCCGAGACGGCTGAAATCGCAGTCCGCGCGGCCATGACGGGACACCTCGTTCTTTCAAGCCTGCAT
ACAAGAGATGCTAAGGGCGCCATATACAGGCTGCTGGAGTTCGGCGTGAACATGACAGAAATTGAACAAACCGTCATTGC
TATTGCCGCTCAGCGTCTGGTTGATTTAACATGTCCGTTCTGCAAAGAGGAAAACTGTTCCGTGTACTGCCGGATGTACA
GGCAGACACGCCGTGCGGGCATTTATGAACTGCTCTACGGGAAAAACCTCACCCAATGCTTTCAGGAAGCAAAGGGAGAG
CACGCCAATTTTCAATATCAGACGCTCCGCAGGCTGATCAGAAAAGGAATCGCGCTCGGCTATGTCACGACCGACAATTA
CGATCGGTGGGTGTATCATGAAGCGGATTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(10-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

82.022

100

0.82
  pilB Glaesserella parasuis strain SC1401

38.793

97.753

0.379
  pilF Thermus thermophilus HB27

37.892

98.596

0.374

Multiple sequence alignment