Detailed information NTG0056380

Bioinformatically predicted

Overview

• Name: comGD
• Type: Machinery gene
• Locus tag: BAM5036_RS11430
• Genome accession: NC_020410
• Coordinates: 2421608..2422045 (-)
• Length: 145 a.a.
• NCBI ID: WP_015417817.1
• Uniprot ID: -
• Organism: Bacillus velezensis UCMB5036
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2416608..2427045

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BAM5036_RS11380 (BAM5036_2214)	sinI	2416992..2417165 (+)	174	WP_003153105.1	anti-repressor SinI	Regulator
BAM5036_RS11385 (BAM5036_2215)	sinR	2417199..2417534 (+)	336	WP_003153104.1	transcriptional regulator SinR	Regulator
BAM5036_RS11390 (BAM5036_2216)	tasA	2417582..2418367 (-)	786	WP_007408329.1	biofilm matrix protein TasA	-
BAM5036_RS11395 (BAM5036_2217)	sipW	2418432..2419016 (-)	585	WP_015240205.1	signal peptidase I SipW	-
BAM5036_RS11400 (BAM5036_2218)	tapA	2418988..2419659 (-)	672	WP_015417813.1	amyloid fiber anchoring/assembly protein TapA	-
BAM5036_RS11405 (BAM5036_2220)	-	2419918..2420247 (+)	330	WP_012117979.1	DUF3889 domain-containing protein	-
BAM5036_RS11410 (BAM5036_2221)	-	2420287..2420466 (-)	180	WP_003153093.1	YqzE family protein	-
BAM5036_RS11415 (BAM5036_2222)	comGG	2420523..2420900 (-)	378	WP_015417814.1	competence type IV pilus minor pilin ComGG	Machinery gene
BAM5036_RS11420 (BAM5036_2223)	comGF	2420901..2421401 (-)	501	WP_258548905.1	competence type IV pilus minor pilin ComGF	-
BAM5036_RS11425 (BAM5036_2224)	comGE	2421310..2421624 (-)	315	WP_031378943.1	competence type IV pilus minor pilin ComGE	-
BAM5036_RS11430 (BAM5036_2225)	comGD	2421608..2422045 (-)	438	WP_015417817.1	competence type IV pilus minor pilin ComGD	Machinery gene
BAM5036_RS11435 (BAM5036_2226)	comGC	2422035..2422301 (-)	267	WP_050515801.1	competence type IV pilus major pilin ComGC	Machinery gene
BAM5036_RS11440 (BAM5036_2227)	comGB	2422348..2423385 (-)	1038	WP_015417819.1	competence type IV pilus assembly protein ComGB	Machinery gene
BAM5036_RS11445 (BAM5036_2228)	comGA	2423372..2424442 (-)	1071	WP_003153083.1	competence type IV pilus ATPase ComGA	Machinery gene
BAM5036_RS11450 (BAM5036_2229)	-	2424635..2425585 (-)	951	WP_015417820.1	magnesium transporter CorA family protein	-
BAM5036_RS11455 (BAM5036_2230)	-	2425731..2427032 (+)	1302	WP_012117986.1	hemolysin family protein	-

Sequence

Protein

• Length: 145 a.a.
• Molecular weight: 16226.70 Da
• Isoelectric Point: 10.1850

>NTDB_id=56380 BAM5036_RS11430 WP_015417817.1 2421608..2422045(-) (comGD) [Bacillus velezensis UCMB5036]
MNNNRRTENGFTLLESLIVLSLASVLLTVLFTTVPPACTHLAVRQKTEQLQKDIQLAQETAIAEHKRTKITFLPKEHKYK
LQSGGRIVERSFDSLHITLVTLPESLEFNEKGHPNSGGKIQLKSAGFTYEITVYLGSGNVHAKRK

Nucleotide

• Length: 438 bp

>NTDB_id=56380 BAM5036_RS11430 WP_015417817.1 2421608..2422045(-) (comGD) [Bacillus velezensis UCMB5036]
TTGAACAATAACAGGCGGACAGAAAATGGGTTTACCCTTCTTGAAAGCCTGATTGTGTTAAGTCTGGCGTCCGTCCTGCT
GACGGTTTTGTTCACGACGGTTCCGCCGGCCTGCACCCACCTTGCCGTGCGGCAAAAAACAGAACAGCTCCAAAAAGATA
TTCAGCTTGCTCAGGAAACGGCTATCGCAGAACATAAAAGAACAAAAATCACTTTTCTTCCAAAAGAGCATAAATACAAA
CTGCAGTCAGGCGGAAGGATTGTCGAGCGTTCCTTTGATTCGCTTCACATTACACTTGTGACTTTACCGGAGAGCCTTGA
ATTTAACGAAAAAGGCCATCCGAATTCGGGAGGAAAGATCCAATTGAAGAGCGCCGGGTTCACCTATGAGATCACAGTTT
ACTTAGGGAGCGGAAATGTCCATGCTAAACGGAAATAA

Domains

Predicted by InterproScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (5-31)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comGD	Bacillus subtilis subsp. subtilis str. 168	56.164	100	0.566