Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   KGP25_RS23615 Genome accession   NZ_CP074170
Coordinates   4865980..4867500 (+) Length   506 a.a.
NCBI ID   WP_223539689.1    Uniprot ID   -
Organism   Enterobacter sp. JBIWA003     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 4860980..4872500
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KGP25_RS23590 (KGP25_23455) ilvE 4862546..4863475 (-) 930 WP_023309654.1 branched-chain-amino-acid transaminase -
  KGP25_RS23595 (KGP25_23460) ilvM 4863494..4863757 (-) 264 WP_006179206.1 acetolactate synthase 2 small subunit -
  KGP25_RS23600 (KGP25_23465) ilvG 4863754..4865400 (-) 1647 WP_223539688.1 acetolactate synthase 2 catalytic subunit -
  KGP25_RS23605 (KGP25_23470) ilvX 4865403..4865453 (-) 51 WP_166792073.1 peptide IlvX -
  KGP25_RS23610 (KGP25_23475) ilvL 4865540..4865638 (-) 99 WP_001311244.1 ilv operon leader peptide -
  KGP25_RS23615 (KGP25_23480) comM 4865980..4867500 (+) 1521 WP_223539689.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  KGP25_RS23620 (KGP25_23485) - 4867531..4867869 (-) 339 WP_008501577.1 DUF413 domain-containing protein -
  KGP25_RS23625 (KGP25_23490) hdfR 4867988..4868809 (+) 822 WP_032675646.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54979.02 Da        Isoelectric Point: 7.1226

>NTDB_id=563762 KGP25_RS23615 WP_223539689.1 4865980..4867500(+) (comM) [Enterobacter sp. JBIWA003]
MSLSVVYTRAALGVKAPLVSVEVHLSNGLPGLTLVGLPETTVKEARDRVRSAIINSGYTFPAKKITINLAPADLPKEGGR
YDLPIAIALLAASEQLNTTRLGSYEFVGELALTGALRGVPGAISGALEAIRAGRQIIVANENASEVSLIAEKGCLIAGHL
QEVCAWLEGRHELSEPEECDEVITDVPEDLSEIMGQEQGKRALEITAAGGHNLLLIGPPGTGKTMLASRLSGLLPPLNNH
EALESAAIYSLISSASLQKQWRRRPFRSPHHSASLTAMVGGGSIPGPGEISLAHNGILFLDELPEFERRVLDALREPIES
GEIHISRTRAKISYPAQFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLGKLSGPFLDRFDLSLEIPLPPPGLLRQTGITG
ESSAKVRERVIAAQARQYTRQNRLNARLDNAGIRQFCALNSEDAVWLEEALTRFGLSIRAWQRLLKVARTIADVEGCTDI
ERKHLQEALSYRAIDRLLLHLQKLLA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=563762 KGP25_RS23615 WP_223539689.1 4865980..4867500(+) (comM) [Enterobacter sp. JBIWA003]
ATGTCACTGTCAGTTGTTTATACGCGTGCGGCCCTCGGGGTAAAGGCACCGCTTGTTTCCGTAGAGGTGCATTTGAGTAA
TGGGCTGCCCGGACTCACGCTTGTCGGGTTACCTGAAACGACGGTTAAAGAAGCCAGGGATCGCGTCCGTAGCGCAATAA
TAAATAGCGGTTATACCTTCCCTGCGAAGAAGATCACCATCAACCTTGCTCCCGCCGACCTGCCTAAAGAAGGGGGACGA
TACGATTTACCTATCGCAATTGCCCTTCTCGCGGCTTCTGAGCAGCTTAATACGACAAGGCTAGGCTCGTATGAGTTCGT
GGGTGAACTCGCGCTCACAGGCGCGCTGAGAGGCGTTCCCGGCGCGATATCGGGAGCGCTAGAGGCCATACGAGCAGGCC
GGCAAATCATTGTGGCCAATGAAAACGCATCAGAAGTGAGTCTTATCGCGGAAAAAGGATGCCTCATCGCGGGACATTTA
CAGGAAGTTTGTGCCTGGCTGGAAGGACGACATGAACTGTCCGAACCGGAGGAGTGTGACGAGGTTATAACCGACGTCCC
GGAGGATCTCAGCGAGATTATGGGACAGGAGCAAGGGAAGCGGGCACTGGAGATTACGGCCGCAGGTGGACACAATCTTC
TGTTGATTGGCCCGCCAGGTACGGGGAAAACGATGCTGGCGAGCAGGCTGAGCGGGCTGCTTCCGCCGCTTAATAATCAT
GAAGCGCTGGAAAGCGCTGCCATCTATAGCCTCATCAGTTCTGCATCGTTGCAAAAACAGTGGCGCCGTCGTCCTTTTCG
TTCCCCACATCATAGCGCTTCACTGACGGCGATGGTCGGCGGCGGGTCTATCCCCGGCCCGGGTGAGATCTCACTGGCGC
ACAATGGCATTCTGTTTCTCGATGAGCTGCCCGAGTTTGAGCGCCGCGTGCTGGATGCGCTGAGAGAACCTATTGAATCT
GGCGAAATACATATCTCGCGCACGCGGGCCAAAATAAGCTATCCCGCGCAGTTTCAACTGGTCGCTGCGATGAATCCCAG
CCCGACGGGCCACTACCAGGGCAACCATAACCGCTGTACGCCAGAGCAGACGCTGCGCTATCTGGGAAAGTTATCCGGTC
CGTTCCTCGACCGTTTCGATTTATCTCTCGAAATCCCGCTTCCTCCTCCGGGCCTGCTCAGGCAGACGGGCATCACGGGT
GAAAGCTCTGCGAAGGTACGCGAGCGGGTGATCGCCGCCCAGGCACGACAGTACACTCGCCAGAACAGGCTAAATGCGCG
GCTGGATAATGCCGGCATCCGGCAGTTTTGTGCCCTTAACAGTGAGGATGCGGTATGGCTGGAGGAGGCGTTGACGCGCT
TTGGGCTATCTATACGTGCGTGGCAGCGTTTGCTAAAAGTGGCCAGAACCATTGCTGACGTGGAGGGATGTACTGACATT
GAGAGGAAACACTTGCAGGAGGCGCTGAGCTATCGCGCTATCGATCGTTTGCTGCTGCATCTGCAGAAGTTGCTGGCATA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

58.743

100

0.591
  comM Glaesserella parasuis strain SC1401

58.58

100

0.587
  comM Vibrio campbellii strain DS40M4

58.73

99.605

0.585
  comM Vibrio cholerae strain A1552

58.765

99.209

0.583
  comM Legionella pneumophila str. Paris

50.302

98.221

0.494
  comM Legionella pneumophila strain ERS1305867

50.302

98.221

0.494
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.984

100

0.441