Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   L7H22_RS16230 Genome accession   NZ_CP091839
Coordinates   3373434..3373970 (+) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A370V115
Organism   Escherichia coli strain SWYHX138.261ft     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3368434..3378970
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L7H22_RS16210 (L7H22_16210) aphA 3368722..3369435 (+) 714 WP_238058989.1 acid phosphatase AphA -
  L7H22_RS16215 (L7H22_16215) yjbQ 3369546..3369962 (+) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  L7H22_RS16220 (L7H22_16220) yjbR 3369966..3370322 (+) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  L7H22_RS16225 (L7H22_16225) uvrA 3370357..3373179 (-) 2823 WP_000357740.1 excinuclease ABC subunit UvrA Machinery gene
  L7H22_RS16230 (L7H22_16230) ssb 3373434..3373970 (+) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  L7H22_RS16235 (L7H22_16235) yjcB 3374069..3374350 (-) 282 WP_001295689.1 YjcB family protein -
  L7H22_RS16240 (L7H22_16240) pdeC 3374779..3376365 (+) 1587 WP_238058990.1 c-di-GMP phosphodiesterase PdeC -
  L7H22_RS16245 (L7H22_16245) soxS 3376368..3376691 (-) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  L7H22_RS16250 (L7H22_16250) soxR 3376777..3377241 (+) 465 WP_000412435.1 redox-sensitive transcriptional activator SoxR -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=563749 L7H22_RS16230 WP_000168305.1 3373434..3373970(+) (ssb) [Escherichia coli strain SWYHX138.261ft]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=563749 L7H22_RS16230 WP_000168305.1 3373434..3373970(+) (ssb) [Escherichia coli strain SWYHX138.261ft]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTTGGTGGTCGTCAGGGTGGTGGCGCTCCTGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489