Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   KGP25_RS01950 Genome accession   NZ_CP074170
Coordinates   408747..409271 (+) Length   174 a.a.
NCBI ID   WP_008503384.1    Uniprot ID   A0A156LWB5
Organism   Enterobacter sp. JBIWA003     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 403747..414271
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KGP25_RS01930 (KGP25_01925) aphA 404071..404784 (+) 714 WP_111967844.1 acid phosphatase AphA -
  KGP25_RS01935 (KGP25_01930) - 404898..405314 (+) 417 WP_223539882.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  KGP25_RS01940 (KGP25_01935) - 405317..405670 (+) 354 WP_008503382.1 MmcQ/YjbR family DNA-binding protein -
  KGP25_RS01945 (KGP25_01940) uvrA 405674..408496 (-) 2823 WP_045909175.1 excinuclease ABC subunit UvrA -
  KGP25_RS01950 (KGP25_01945) ssb 408747..409271 (+) 525 WP_008503384.1 single-stranded DNA-binding protein SSB1 Machinery gene
  KGP25_RS01955 (KGP25_01950) - 409333..409614 (-) 282 WP_045261050.1 YjcB family protein -
  KGP25_RS01960 (KGP25_01955) - 410106..411509 (+) 1404 WP_223539883.1 sensor domain-containing diguanylate cyclase -
  KGP25_RS01965 (KGP25_01960) - 411849..413414 (+) 1566 WP_048030238.1 EAL domain-containing protein -
  KGP25_RS01970 (KGP25_01965) soxS 413421..413747 (-) 327 WP_008503387.1 superoxide response transcriptional regulator SoxS -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18593.60 Da        Isoelectric Point: 5.2456

>NTDB_id=563745 KGP25_RS01950 WP_008503384.1 408747..409271(+) (ssb) [Enterobacter sp. JBIWA003]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGAEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQQSAPAP
SNEPPMDFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=563745 KGP25_RS01950 WP_008503384.1 408747..409271(+) (ssb) [Enterobacter sp. JBIWA003]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATGCCGAGTGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGTGAGATGAAAGAGCAGACCG
AATGGCACCGCGTTGTGCTGTTTGGCAAACTGGCCGAAGTGGCCGGTGAATATCTGCGTAAAGGTTCTCAGGTCTATATC
GAAGGCCAGCTGCGCACCCGCAAATGGACCGATCAGTCCGGTGCTGAGAAGTACACGACGGAAGTGGTGGTTAACGTCGG
CGGCACCATGCAGATGCTGGGTGGCCGTCAGGGCGGCGGCGCACCAGCAGGTGGCGGCCAGCAGCAGGGCGGTTGGGGTC
AGCCTCAGCAGCCGCAGGGTGGCAACCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGCAGTCTGCTCCTGCACCG
TCTAACGAACCGCCAATGGATTTCGACGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A156LWB5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

76.111

100

0.787
  ssb Glaesserella parasuis strain SC1401

57.377

100

0.603
  ssb Neisseria meningitidis MC58

47.191

100

0.483
  ssb Neisseria gonorrhoeae MS11

47.191

100

0.483
  ssbA Bacillus subtilis subsp. subtilis str. 168

35.556

100

0.368