Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   KGP22_RS21610 Genome accession   NZ_CP074159
Coordinates   4537182..4538702 (+) Length   506 a.a.
NCBI ID   WP_223580745.1    Uniprot ID   -
Organism   Enterobacter sp. JBIWA005     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4532182..4543702
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KGP22_RS21585 (KGP22_21480) ilvE 4533748..4534677 (-) 930 WP_127732610.1 branched-chain-amino-acid transaminase -
  KGP22_RS21590 (KGP22_21485) ilvM 4534696..4534959 (-) 264 WP_024907956.1 acetolactate synthase 2 small subunit -
  KGP22_RS21595 (KGP22_21490) ilvG 4534956..4536602 (-) 1647 WP_223580743.1 acetolactate synthase 2 catalytic subunit -
  KGP22_RS21600 (KGP22_21495) ilvX 4536605..4536655 (-) 51 WP_166792073.1 peptide IlvX -
  KGP22_RS21605 (KGP22_21500) ilvL 4536742..4536840 (-) 99 WP_001311244.1 ilv operon leader peptide -
  KGP22_RS21610 (KGP22_21505) comM 4537182..4538702 (+) 1521 WP_223580745.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  KGP22_RS21615 (KGP22_21510) - 4538733..4539071 (-) 339 WP_008501577.1 DUF413 domain-containing protein -
  KGP22_RS21620 (KGP22_21515) hdfR 4539190..4540011 (+) 822 WP_111963500.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55061.93 Da        Isoelectric Point: 6.6904

>NTDB_id=563717 KGP22_RS21610 WP_223580745.1 4537182..4538702(+) (comM) [Enterobacter sp. JBIWA005]
MSLSVVYTRAALGVKAPFVSVEVHLSNGLPGLTLVGLPETTVKEARDRVRSAIINSGYTFPAKKITINLAPADLPKEGGR
YDLPIAIALLAASEQLNTTRLGSYEFVGELALTGALRGVPGAISGALEAIRAGRQIIVANENASEVSLIAEKGCLIAGHL
QEVCAWLEGRHELSEPEECDDVITDVPEDLSEIMGQEQGKRALEITAAGEHNLLLIGPPGTGKTMLASRLSGLLPPLNNH
EALESAAIYSLISSASLQKQWRRRPFRSPHHSASLTAMVGGGSIPGPGEISLAHNGILFLDELPEFERRVLDALREPIES
GEIHISRTRAKISYPAQFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLGKLSGPFLDRFDLSLEIPLPPPGLLRQTGITG
ESSADVRERVIAAQTRQYARQNRLNARLDNAGIRQFCSLNSEDAGWLEETLTRFGLSIRAWQRLLKVARTIADVEGCTDI
ERKHLQEALSYRAIDRLLLHLQKLLA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=563717 KGP22_RS21610 WP_223580745.1 4537182..4538702(+) (comM) [Enterobacter sp. JBIWA005]
ATGTCACTGTCAGTTGTTTATACGCGTGCGGCTCTCGGGGTAAAGGCACCGTTTGTTTCCGTTGAGGTTCATTTGAGTAA
TGGGCTACCCGGACTCACGCTTGTCGGTTTACCTGAAACGACGGTTAAAGAGGCCAGGGATCGCGTTCGCAGCGCAATAA
TAAATAGCGGTTATACCTTCCCTGCGAAGAAGATCACCATCAACCTTGCTCCCGCCGATCTGCCTAAAGAGGGGGGACGA
TACGATTTACCTATCGCAATTGCCCTTCTCGCGGCTTCTGAGCAGCTTAATACGACAAGGCTAGGCTCGTATGAGTTCGT
GGGTGAACTCGCGCTCACAGGCGCGTTAAGAGGCGTTCCCGGTGCGATATCAGGAGCGCTGGAGGCCATACGTGCCGGGC
GGCAAATCATTGTCGCAAATGAAAACGCATCAGAAGTGAGTCTTATCGCCGAGAAAGGATGCCTCATCGCGGGACATTTA
CAGGAAGTTTGTGCCTGGCTGGAAGGACGACATGAACTGTCCGAGCCAGAGGAGTGTGACGATGTTATAACCGACGTCCC
GGAGGATCTCAGCGAGATTATGGGGCAGGAGCAAGGGAAACGGGCGCTGGAGATTACGGCCGCAGGTGAACACAATCTTC
TGTTGATTGGCCCGCCGGGTACGGGGAAAACGATGCTGGCGAGCAGGTTGAGTGGATTGCTTCCACCGCTCAATAATCAT
GAAGCGCTGGAAAGCGCTGCCATATATAGCCTCATCAGTTCTGCATCGTTGCAAAAACAGTGGCGCCGTCGCCCTTTTCG
TTCCCCGCATCATAGCGCTTCACTGACGGCAATGGTCGGCGGCGGGTCTATCCCCGGGCCGGGAGAAATCTCACTGGCCC
ATAATGGAATTCTATTTCTCGATGAGCTGCCCGAGTTTGAGCGCCGCGTGCTGGATGCACTGAGAGAACCTATTGAATCT
GGCGAAATACATATCTCGCGCACGCGGGCCAAAATAAGCTATCCCGCGCAGTTTCAACTGGTCGCTGCGATGAACCCCAG
CCCCACGGGCCACTACCAGGGCAACCATAACCGCTGTACGCCGGAGCAAACGTTGCGCTATCTGGGTAAGTTATCCGGCC
CGTTCCTCGACCGTTTCGATTTATCCCTCGAAATCCCCCTTCCTCCGCCGGGTCTGCTCAGGCAGACGGGTATCACGGGT
GAAAGCTCAGCGGATGTACGCGAGCGGGTGATTGCGGCCCAGACGCGGCAGTATGCTCGTCAGAACAGGCTAAATGCGCG
GCTGGATAATGCCGGGATCCGGCAGTTTTGTTCCCTTAACAGTGAGGATGCGGGATGGCTAGAGGAGACGTTGACCCGTT
TTGGGCTGTCTATACGTGCGTGGCAGCGTTTGCTAAAAGTGGCCAGAACCATTGCTGACGTGGAGGGGTGCACTGACATT
GAGAGAAAGCATTTGCAGGAGGCGCTGAGCTATCGCGCTATCGATCGTTTGCTGCTGCATTTGCAGAAGTTGCTAGCATA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

58.73

99.605

0.585
  comM Haemophilus influenzae Rd KW20

58.153

100

0.585
  comM Vibrio cholerae strain A1552

58.765

99.209

0.583
  comM Glaesserella parasuis strain SC1401

58.185

100

0.583
  comM Legionella pneumophila str. Paris

50.302

98.221

0.494
  comM Legionella pneumophila strain ERS1305867

50.302

98.221

0.494
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.59

100

0.437