Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   KGP22_RS01460 Genome accession   NZ_CP074159
Coordinates   319619..320149 (+) Length   176 a.a.
NCBI ID   WP_023310055.1    Uniprot ID   A0A7W2V7Q4
Organism   Enterobacter sp. JBIWA005     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 314619..325149
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KGP22_RS01440 (KGP22_01435) aphA 314943..315656 (+) 714 WP_059347291.1 acid phosphatase AphA -
  KGP22_RS01445 (KGP22_01440) - 315770..316186 (+) 417 WP_111964202.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  KGP22_RS01450 (KGP22_01445) - 316189..316542 (+) 354 WP_111964201.1 MmcQ/YjbR family DNA-binding protein -
  KGP22_RS01455 (KGP22_01450) uvrA 316546..319368 (-) 2823 WP_223581001.1 excinuclease ABC subunit UvrA -
  KGP22_RS01460 (KGP22_01455) ssb 319619..320149 (+) 531 WP_023310055.1 single-stranded DNA-binding protein SSB1 Machinery gene
  KGP22_RS01465 (KGP22_01460) - 320211..320492 (-) 282 WP_008503385.1 YjcB family protein -
  KGP22_RS01470 (KGP22_01465) - 321137..322702 (+) 1566 WP_111964200.1 EAL domain-containing protein -
  KGP22_RS01475 (KGP22_01470) soxS 322709..323035 (-) 327 WP_008503387.1 superoxide response transcriptional regulator SoxS -
  KGP22_RS01480 (KGP22_01475) soxR 323134..323592 (+) 459 WP_008503388.1 redox-sensitive transcriptional activator SoxR -
  KGP22_RS01485 (KGP22_01480) - 323881..324552 (+) 672 WP_149367224.1 glutathione S-transferase -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 18808.81 Da        Isoelectric Point: 5.2456

>NTDB_id=563700 KGP22_RS01460 WP_023310055.1 319619..320149(+) (ssb) [Enterobacter sp. JBIWA005]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGAEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQSQQQGGWGQPQQPQGGNQFSGGAQSRPQQQSAP
APSNEPPMDFDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=563700 KGP22_RS01460 WP_023310055.1 319619..320149(+) (ssb) [Enterobacter sp. JBIWA005]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATGCCGAGTGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGTGAGATGAAAGAGCAGACCG
AATGGCACCGCGTTGTGCTGTTTGGCAAACTGGCCGAAGTGGCCGGAGAATATCTGCGCAAAGGTTCTCAGGTCTATATC
GAAGGCCAGCTGCGTACCCGCAAATGGACCGATCAGTCCGGAGCTGAGAAGTATACGACTGAAGTAGTGGTCAACGTGGG
CGGCACCATGCAGATGCTGGGTGGCCGTCAGGGCGGCGGCGCACCTGCAGGTGGCGGTCAGAGCCAGCAGCAGGGCGGTT
GGGGTCAGCCTCAGCAGCCGCAGGGTGGCAACCAGTTCAGCGGCGGAGCACAGTCTCGTCCGCAGCAGCAGTCTGCTCCG
GCGCCGTCTAACGAACCGCCAATGGATTTCGACGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7W2V7Q4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

76.111

100

0.778
  ssb Glaesserella parasuis strain SC1401

56.216

100

0.591
  ssb Neisseria meningitidis MC58

46.629

100

0.472
  ssb Neisseria gonorrhoeae MS11

46.629

100

0.472
  ssbA Bacillus subtilis subsp. subtilis str. 168

35.556

100

0.364