Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   KGP18_RS21845 Genome accession   NZ_CP074154
Coordinates   4525483..4527003 (+) Length   506 a.a.
NCBI ID   WP_223535295.1    Uniprot ID   -
Organism   Enterobacter asburiae strain JBIWA007     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 4520483..4532003
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KGP18_RS21820 (KGP18_21755) ilvE 4522049..4522978 (-) 930 WP_023326297.1 branched-chain-amino-acid transaminase -
  KGP18_RS21825 (KGP18_21760) ilvM 4522997..4523260 (-) 264 WP_024907956.1 acetolactate synthase 2 small subunit -
  KGP18_RS21830 (KGP18_21765) ilvG 4523257..4524903 (-) 1647 WP_045889364.1 acetolactate synthase 2 catalytic subunit -
  KGP18_RS21835 (KGP18_21770) ilvX 4524906..4524956 (-) 51 WP_223537989.1 peptide IlvX -
  KGP18_RS21840 (KGP18_21775) ilvL 4525043..4525141 (-) 99 WP_001311244.1 ilv operon leader peptide -
  KGP18_RS21845 (KGP18_21780) comM 4525483..4527003 (+) 1521 WP_223535295.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  KGP18_RS21850 (KGP18_21785) - 4527034..4527372 (-) 339 WP_023309658.1 DUF413 domain-containing protein -
  KGP18_RS21855 (KGP18_21790) hdfR 4527491..4528312 (+) 822 WP_223535297.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54907.81 Da        Isoelectric Point: 6.7740

>NTDB_id=563695 KGP18_RS21845 WP_223535295.1 4525483..4527003(+) (comM) [Enterobacter asburiae strain JBIWA007]
MSLSVVYTRAALGVKAPLISVEVHLSNGLPGLTLVGLPETTVKEARDRVRSAIINSGYTFPAKKITINLAPADLPKEGGR
YDLPIAIALLAASEQLNTTRLGSYEFVGELALTGALRGVPGAISGALEAIRAGRQIIVANENASEVSLIADKGCLIAGHL
QEVCAWLEGRYELSEPEECDDAIADAPEDLSEIMGQEQGKRALEITAAGGHNLLLIGPPGTGKTMLASRLSGLLPPLNNH
EALESAAIYSLISSTSLQKQWRRRPFRSPHHSASLTAMVGGGSIPGPGEISLAHNGILFLDELPEFERRVLDALREPIES
GEIHISRARAKISYPAQFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLGKLSGPFLDRFDLSLEIPLPPPGLLRQTGITG
ESSAEVRERVVAAQTRQYARQNRLNARLDNAGIRQFCSLNVEDAGWLEETLTRFGLSIRAWQRLLKVARTIADVEGCTDI
ERKHLQEALSYRAIDRLLLHLQKLLA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=563695 KGP18_RS21845 WP_223535295.1 4525483..4527003(+) (comM) [Enterobacter asburiae strain JBIWA007]
ATGTCACTGTCAGTTGTTTATACGCGTGCGGCTCTCGGGGTGAAAGCACCGCTTATTTCCGTCGAGGTTCATTTGAGCAA
TGGGCTACCCGGACTCACTCTTGTCGGGTTACCTGAAACGACGGTTAAAGAGGCCAGGGATCGCGTTCGCAGCGCAATAA
TAAATAGCGGTTATACCTTCCCCGCGAAGAAGATCACCATCAACCTTGCCCCCGCCGATCTGCCTAAAGAGGGGGGACGA
TACGATTTACCTATCGCAATTGCCCTTCTCGCGGCTTCTGAGCAGCTTAATACGACACGGCTAGGCTCGTATGAGTTCGT
TGGCGAACTCGCGCTTACAGGCGCGTTAAGAGGCGTTCCCGGTGCGATATCGGGAGCGCTGGAAGCCATACGAGCAGGAC
GGCAAATCATTGTCGCCAATGAAAACGCATCAGAAGTGAGTCTTATCGCCGATAAGGGGTGTCTCATCGCAGGGCATTTA
CAGGAAGTTTGTGCCTGGCTGGAAGGGCGGTATGAACTGTCCGAGCCGGAGGAGTGTGATGATGCTATAGCGGATGCACC
AGAGGATCTCAGCGAGATTATGGGGCAGGAGCAAGGGAAGCGGGCGCTGGAGATTACGGCAGCAGGTGGACACAATCTTC
TGTTAATTGGCCCGCCGGGTACGGGTAAAACAATGCTGGCAAGCAGGTTAAGTGGGTTGCTTCCACCGCTCAATAATCAT
GAAGCGCTGGAAAGTGCCGCCATATATAGCCTTATCAGTTCGACGTCGTTGCAAAAACAGTGGCGCCGCCGTCCTTTTCG
TTCGCCGCATCATAGCGCTTCACTGACGGCAATGGTTGGCGGCGGGTCTATCCCCGGGCCGGGTGAGATCTCGCTGGCAC
ACAATGGCATTCTGTTTCTCGATGAGCTGCCTGAGTTTGAGCGCCGCGTGCTGGATGCACTGAGGGAGCCCATTGAATCC
GGTGAGATACATATCTCACGCGCACGAGCGAAAATAAGCTATCCCGCGCAGTTTCAGCTGGTCGCGGCGATGAATCCCAG
TCCGACGGGTCACTACCAGGGAAACCATAACCGCTGTACGCCAGAGCAGACGTTGCGTTATCTGGGTAAGTTATCCGGCC
CGTTCCTCGACCGTTTCGATTTATCCCTCGAAATTCCCCTTCCCCCGCCGGGTCTGCTCAGGCAAACGGGCATAACAGGT
GAAAGCTCAGCAGAGGTACGCGAACGGGTGGTTGCAGCCCAGACGCGGCAGTACGCTCGTCAGAACAGGTTGAATGCGCG
GCTTGATAACGCCGGGATCCGGCAGTTTTGTTCTCTTAACGTTGAGGATGCGGGCTGGCTCGAGGAAACGTTAACGCGGT
TCGGGCTGTCCATACGTGCGTGGCAGCGTTTGCTGAAGGTGGCCAGAACTATTGCTGACGTGGAGGGATGCACTGACATT
GAGAGAAAGCATTTGCAGGAGGCGCTGAGCTACCGCGCTATCGATCGTTTGCTGCTGCATTTGCAGAAATTGCTGGCATA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

58.743

100

0.591
  comM Glaesserella parasuis strain SC1401

58.383

100

0.585
  comM Vibrio campbellii strain DS40M4

58.532

99.605

0.583
  comM Vibrio cholerae strain A1552

58.566

99.209

0.581
  comM Legionella pneumophila str. Paris

50.302

98.221

0.494
  comM Legionella pneumophila strain ERS1305867

50.302

98.221

0.494
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.379

100

0.445