Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   KGP24_RS01795 Genome accession   NZ_CP074149
Coordinates   378410..378940 (+) Length   176 a.a.
NCBI ID   WP_023310055.1    Uniprot ID   A0A7W2V7Q4
Organism   Enterobacter sp. JBIWA008     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 373410..383940
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KGP24_RS01775 (KGP24_01775) aphA 373733..374446 (+) 714 WP_223562180.1 acid phosphatase AphA -
  KGP24_RS01780 (KGP24_01780) - 374560..374976 (+) 417 WP_223562181.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  KGP24_RS01785 (KGP24_01785) - 374979..375332 (+) 354 WP_023310053.1 MmcQ/YjbR family DNA-binding protein -
  KGP24_RS01790 (KGP24_01790) uvrA 375336..378158 (-) 2823 WP_223562182.1 excinuclease ABC subunit UvrA -
  KGP24_RS01795 (KGP24_01795) ssb 378410..378940 (+) 531 WP_023310055.1 single-stranded DNA-binding protein SSB1 Machinery gene
  KGP24_RS01800 (KGP24_01800) - 379003..379284 (-) 282 WP_008503385.1 YjcB family protein -
  KGP24_RS01805 (KGP24_01805) - 379927..381492 (+) 1566 WP_223562183.1 EAL domain-containing protein -
  KGP24_RS01810 (KGP24_01810) soxS 381499..381825 (-) 327 WP_013095071.1 superoxide response transcriptional regulator SoxS -
  KGP24_RS01815 (KGP24_01815) soxR 381924..382382 (+) 459 WP_023331806.1 redox-sensitive transcriptional activator SoxR -
  KGP24_RS01820 (KGP24_01820) - 382649..383320 (+) 672 WP_223562184.1 glutathione S-transferase -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 18808.81 Da        Isoelectric Point: 5.2456

>NTDB_id=563655 KGP24_RS01795 WP_023310055.1 378410..378940(+) (ssb) [Enterobacter sp. JBIWA008]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGAEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQSQQQGGWGQPQQPQGGNQFSGGAQSRPQQQSAP
APSNEPPMDFDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=563655 KGP24_RS01795 WP_023310055.1 378410..378940(+) (ssb) [Enterobacter sp. JBIWA008]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATGCCGAGTGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGTGAGATGAAAGAGCAGACCG
AATGGCACCGCGTTGTGCTGTTTGGCAAACTGGCCGAAGTGGCCGGTGAGTATCTGCGTAAAGGCTCTCAGGTCTATATC
GAAGGCCAGCTGCGTACCCGCAAATGGACCGATCAGTCCGGTGCTGAGAAGTACACCACTGAAGTCGTGGTTAACGTGGG
CGGCACCATGCAGATGCTGGGTGGCCGTCAGGGCGGTGGTGCACCAGCGGGTGGCGGTCAGAGCCAGCAGCAGGGCGGTT
GGGGTCAGCCTCAGCAGCCTCAGGGCGGCAACCAGTTCAGCGGTGGCGCACAGTCTCGTCCGCAGCAGCAGTCTGCTCCG
GCGCCGTCTAACGAACCGCCAATGGATTTCGACGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7W2V7Q4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

76.111

100

0.778
  ssb Glaesserella parasuis strain SC1401

56.216

100

0.591
  ssb Neisseria meningitidis MC58

46.629

100

0.472
  ssb Neisseria gonorrhoeae MS11

46.629

100

0.472
  ssbA Bacillus subtilis subsp. subtilis str. 168

35.556

100

0.364