Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   KGP21_RS27660 Genome accession   NZ_CP074140
Coordinates   5810216..5811739 (+) Length   507 a.a.
NCBI ID   WP_094982438.1    Uniprot ID   -
Organism   Serratia sp. JSRIV004     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 5805216..5816739
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KGP21_RS27635 (KGP21_27545) ilvE 5805418..5806344 (-) 927 WP_021181823.1 branched-chain-amino-acid transaminase -
  KGP21_RS27640 (KGP21_27550) ilvM 5806366..5806623 (-) 258 WP_021181824.1 acetolactate synthase 2 small subunit -
  KGP21_RS27645 (KGP21_27555) ilvG 5806620..5808266 (-) 1647 WP_223538551.1 acetolactate synthase 2 catalytic subunit -
  KGP21_RS27650 (KGP21_27560) ilvL 5808408..5808506 (-) 99 WP_071681478.1 ilv operon leader peptide -
  KGP21_RS27655 (KGP21_27565) - 5808640..5809872 (-) 1233 WP_021807367.1 MFS transporter -
  KGP21_RS27660 (KGP21_27570) comM 5810216..5811739 (+) 1524 WP_094982438.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  KGP21_RS27665 (KGP21_27575) - 5811768..5812106 (-) 339 WP_021181829.1 DUF413 domain-containing protein -
  KGP21_RS27670 (KGP21_27580) hdfR 5812226..5813053 (+) 828 WP_021807365.1 HTH-type transcriptional regulator HdfR -
  KGP21_RS27675 (KGP21_27585) yjfF 5813058..5814050 (-) 993 WP_037376500.1 galactofuranose ABC transporter, permease protein YjfF -
  KGP21_RS27680 (KGP21_27590) ytfT 5814047..5815048 (-) 1002 WP_037376499.1 galactofuranose ABC transporter, ATP-binding protein YtfT -
  KGP21_RS27685 (KGP21_27595) ytfR 5815066..5816580 (-) 1515 WP_179253263.1 galactofuranose ABC transporter, ATP-binding protein YtfR -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 54705.08 Da        Isoelectric Point: 8.9562

>NTDB_id=563609 KGP21_RS27660 WP_094982438.1 5810216..5811739(+) (comM) [Serratia sp. JSRIV004]
MSLAVIYTRATIGVQAPSVMVEVHISNGLPGLTLVGLPETTVKEARDRVRSALINNGFTFPAKRITVNLAPADLPKEGGR
YDLPIALAILAASEQLPADKLAHYEFLGELALSGALRAVHGAIPAAIAAAEAKRELILAAANGKEAGLLPNSTTRVAEHL
LEVCAFLQGKGELPIAVAPPAAATSTETADLQEVIGQEQAKRALEIAAAGGHNLLLLGPPGTGKTMLASRLNGLLPPLSD
REALESVAVASLLHHPDETLPWRQRPFRAPHHSASMAALVGGGSLPRPGEISMAHNGVLFLDELPEFERRVLDALREPLE
SGEIVISRASAKVRFPARVQLIAAMNPSPTGHYQGIHNRTPPQQILRYLGRLSGPFLDRFDLSIEVPLLPPGVLAKQRHA
GESSQQVRQRVLVARERQLARAGKVNALLSNREVDRDCHLPAAEAEFLERTLSQLGLSVRAWHRILKVARTLADLTGEQQ
IDKRHLSEALSYRSMDRLLLQLHRSLE

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=563609 KGP21_RS27660 WP_094982438.1 5810216..5811739(+) (comM) [Serratia sp. JSRIV004]
ATGTCACTGGCGGTAATCTATACCCGTGCCACGATCGGCGTGCAGGCACCTTCGGTCATGGTTGAAGTCCATATCAGCAA
CGGATTACCCGGCCTCACGCTGGTCGGTCTACCGGAAACCACGGTGAAAGAAGCCCGTGACCGGGTGCGCAGCGCACTGA
TCAACAACGGCTTCACCTTTCCGGCCAAACGCATCACCGTCAATCTGGCACCCGCCGATTTGCCTAAGGAAGGGGGGCGC
TATGATTTACCCATTGCGCTGGCCATTCTGGCGGCCTCAGAACAGTTGCCAGCAGATAAGTTGGCGCACTATGAGTTCCT
GGGTGAATTGGCGCTTTCTGGCGCATTGAGGGCGGTGCACGGCGCCATTCCGGCGGCAATAGCGGCAGCCGAGGCCAAGC
GTGAGCTGATCCTCGCAGCGGCCAACGGCAAAGAGGCAGGGTTGCTTCCCAACAGCACAACCCGAGTCGCGGAACATTTG
CTTGAGGTTTGCGCTTTTTTGCAAGGTAAGGGTGAGCTGCCGATCGCCGTAGCGCCCCCTGCGGCCGCCACGTCAACGGA
AACTGCCGACCTGCAGGAAGTCATTGGCCAGGAGCAGGCAAAACGAGCGTTGGAAATTGCCGCGGCCGGGGGCCACAACC
TATTGCTGCTTGGCCCTCCGGGCACCGGAAAAACCATGCTGGCCAGCCGCCTCAACGGTTTGCTGCCGCCGTTAAGCGAT
CGGGAGGCGTTGGAAAGCGTGGCCGTTGCCAGCTTATTGCATCACCCTGATGAAACCCTGCCATGGCGACAGCGGCCGTT
TCGTGCCCCGCATCACAGCGCTTCGATGGCTGCACTGGTTGGAGGTGGTTCCTTGCCACGGCCAGGGGAAATCTCCATGG
CGCACAACGGCGTGCTATTTCTGGATGAGTTACCGGAATTTGAACGGCGAGTATTGGATGCGCTGCGTGAGCCGCTGGAA
TCCGGTGAAATCGTCATCTCACGCGCTAGTGCCAAGGTACGCTTCCCAGCCAGGGTGCAGCTGATTGCAGCGATGAACCC
CAGCCCAACCGGACACTATCAGGGCATACACAACCGCACGCCACCGCAGCAGATTTTGCGCTACCTCGGCAGGCTCTCTG
GCCCCTTCCTCGATCGATTTGATTTGTCGATTGAGGTGCCACTGCTGCCACCAGGCGTACTGGCCAAGCAGCGCCATGCG
GGGGAAAGCAGCCAACAGGTACGTCAAAGGGTGCTGGTGGCGCGCGAGCGGCAGCTGGCACGTGCAGGTAAAGTGAATGC
GCTGTTGAGTAACCGCGAGGTGGATCGGGATTGCCATTTACCTGCAGCGGAAGCGGAGTTTTTAGAAAGAACGCTGAGCC
AACTGGGATTATCGGTTCGAGCCTGGCATCGCATCCTGAAAGTGGCACGCACACTGGCCGATTTGACGGGGGAACAACAG
ATTGATAAACGCCATCTCAGCGAAGCGCTCAGCTATCGCAGTATGGATCGCCTGCTGCTGCAGTTACACCGCAGCCTGGA
ATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

66.206

99.803

0.661
  comM Vibrio cholerae strain A1552

66.534

99.014

0.659
  comM Glaesserella parasuis strain SC1401

64.694

100

0.647
  comM Vibrio campbellii strain DS40M4

64.94

99.014

0.643
  comM Legionella pneumophila str. Paris

50.403

97.83

0.493
  comM Legionella pneumophila strain ERS1305867

50.403

97.83

0.493
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.078

100

0.464