Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   KFZ67_RS14040 Genome accession   NZ_CP074080
Coordinates   3042157..3043689 (-) Length   510 a.a.
NCBI ID   WP_154139691.1    Uniprot ID   -
Organism   Photobacterium damselae strain Pdd0210     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3037157..3048689
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KFZ67_RS14015 (KFZ67_13975) - 3038190..3038363 (+) 174 WP_005302173.1 hypothetical protein -
  KFZ67_RS14020 (KFZ67_13980) - 3038539..3038805 (+) 267 WP_005302176.1 YihD family protein -
  KFZ67_RS14025 (KFZ67_13985) ccoG 3039000..3040331 (+) 1332 Protein_2557 cytochrome c oxidase accessory protein CcoG -
  KFZ67_RS14030 (KFZ67_13990) - 3040374..3041363 (+) 990 WP_005302181.1 serine/threonine protein kinase -
  KFZ67_RS14035 (KFZ67_13995) - 3041450..3042052 (+) 603 WP_065171005.1 thiol:disulfide interchange protein DsbA/DsbL -
  KFZ67_RS14040 (KFZ67_14000) comM 3042157..3043689 (-) 1533 WP_154139691.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  KFZ67_RS14045 (KFZ67_14005) ilvG 3044229..3045875 (+) 1647 WP_284660311.1 acetolactate synthase 2 catalytic subunit -
  KFZ67_RS14050 (KFZ67_14010) ilvM 3045878..3046135 (+) 258 WP_036764608.1 acetolactate synthase 2 small subunit -
  KFZ67_RS14055 (KFZ67_14015) - 3046175..3047104 (+) 930 WP_065171002.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 510 a.a.        Molecular weight: 55103.36 Da        Isoelectric Point: 8.2787

>NTDB_id=563077 KFZ67_RS14040 WP_154139691.1 3042157..3043689(-) (comM) [Photobacterium damselae strain Pdd0210]
MSLAIVHSRACVGVQAPAVTVEVHLSNGIPSFTLVGLPETTVKEAKDRVRSAIFNANFEFPSRRITVNLAPADLPKEGGR
FDLPIALGILAASGQIPAESLHKYEFLGELALSGQLRPVKGALPAALAALKAKRCLIVPDRNGDQVALVGEKQHKSAPDL
IQVCAHLLGQQSLSLRFQTKPDDDSLDLTQGRDMQDIIGQQQGKRALEIAAAGGHNLLFLGPPGTGKTMLASRLCDLLPP
MSHDEALETAAVASLTQQSIHQGNWLQRPLRAPHHSSSMAALVGGGSIPRPGEISLAHNGILFLDEMPEFERKVLDSLRE
PLESGEIVISRATSKATFPANFQLIGALNPSPTGFYEGAQTRTNPQVILRYLSKLSGPLLDRFDMSIEIPALPKGTLAQG
GERGESTPVIKARVNQARTLMDQRAGKVNARLSTRELDKHCALAREDAEFLENALHQLGLSIRAYHRIIKVARTIADLSN
CEQIERAHLAEALGYRAMDRLLKQLTAQAI

Nucleotide


Download         Length: 1533 bp        

>NTDB_id=563077 KFZ67_RS14040 WP_154139691.1 3042157..3043689(-) (comM) [Photobacterium damselae strain Pdd0210]
ATGTCATTGGCCATTGTGCATAGCCGGGCTTGCGTTGGGGTACAAGCTCCAGCAGTCACTGTTGAAGTTCATTTAAGTAA
TGGAATACCCAGTTTTACTCTGGTGGGTTTACCTGAGACAACGGTAAAAGAGGCCAAAGATCGGGTTCGAAGTGCCATTT
TTAATGCCAATTTTGAGTTTCCCTCTCGGCGAATTACCGTCAATTTAGCTCCCGCTGATTTGCCTAAAGAAGGGGGGCGA
TTTGACTTACCCATCGCGCTTGGAATTTTAGCTGCTTCAGGACAAATACCTGCAGAATCACTGCATAAATACGAATTTTT
AGGGGAGTTGGCTTTATCAGGGCAATTGCGTCCGGTAAAGGGGGCACTGCCTGCTGCTCTTGCTGCATTAAAGGCTAAAA
GGTGTTTGATTGTCCCTGATCGTAATGGCGATCAAGTGGCATTAGTAGGTGAAAAACAACATAAGTCAGCGCCTGATTTG
ATCCAAGTTTGCGCTCACCTATTAGGACAGCAAAGTTTATCTTTACGCTTTCAAACAAAACCCGATGATGATTCGTTAGA
TCTGACTCAGGGGCGAGATATGCAAGATATTATTGGTCAGCAGCAAGGTAAGCGGGCATTGGAAATTGCAGCTGCCGGTG
GCCATAACCTTCTGTTTCTTGGCCCTCCTGGAACGGGAAAAACCATGTTAGCCTCTCGCTTATGTGATTTATTACCCCCT
ATGAGCCATGATGAGGCGTTAGAAACTGCAGCTGTTGCCTCGCTGACTCAGCAGAGCATTCATCAAGGCAATTGGCTACA
ACGACCTCTACGTGCACCTCATCATTCAAGCTCTATGGCTGCCTTAGTTGGTGGAGGTTCAATTCCAAGGCCGGGGGAGA
TCTCTTTGGCGCATAACGGCATTCTTTTTTTAGATGAAATGCCCGAATTTGAGCGTAAGGTTTTGGACTCATTACGAGAA
CCTTTAGAGTCGGGAGAGATTGTGATTTCTCGGGCAACCAGTAAAGCAACCTTTCCAGCAAATTTTCAATTGATTGGAGC
GCTAAATCCGAGTCCAACAGGATTTTATGAAGGCGCACAAACTCGAACTAATCCTCAAGTTATTTTGCGCTATCTCAGTA
AACTCTCTGGCCCGCTGCTTGATAGGTTTGATATGTCGATTGAGATCCCAGCTCTGCCGAAAGGTACTTTAGCTCAAGGT
GGCGAGCGCGGTGAGAGTACTCCTGTGATTAAAGCGCGAGTTAATCAGGCGCGAACCTTAATGGATCAGCGAGCAGGAAA
AGTGAATGCTCGACTCTCTACTCGGGAGTTAGATAAACATTGCGCTCTGGCTCGAGAAGATGCGGAGTTTCTTGAAAATG
CACTGCATCAGTTGGGGCTATCGATTCGTGCGTACCATCGCATTATTAAGGTGGCACGAACCATTGCCGATTTAAGTAAT
TGTGAGCAGATAGAGCGAGCGCATTTAGCTGAAGCGTTAGGATATCGAGCGATGGATCGGTTATTGAAGCAATTAACGGC
TCAAGCGATATGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(193-394)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(404-496)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

76.667

100

0.767
  comM Vibrio cholerae strain A1552

76.275

100

0.763
  comM Glaesserella parasuis strain SC1401

63.333

100

0.633
  comM Haemophilus influenzae Rd KW20

62.722

99.412

0.624
  comM Legionella pneumophila str. Paris

49.699

97.843

0.486
  comM Legionella pneumophila strain ERS1305867

49.699

97.843

0.486
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.083

99.216

0.427