Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | KFU60_RS14715 | Genome accession | NZ_CP073916 |
| Coordinates | 3036594..3037037 (+) | Length | 147 a.a. |
| NCBI ID | WP_194959150.1 | Uniprot ID | - |
| Organism | Lacticaseibacillus paracasei subsp. tolerans strain 2A | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 3028484..3042073 | 3036594..3037037 | within | 0 |
Gene organization within MGE regions
Location: 3028484..3042073
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KFU60_RS14645 (KFU60_14645) | - | 3028484..3029653 (-) | 1170 | WP_194959139.1 | site-specific integrase | - |
| KFU60_RS14900 | - | 3029828..3030460 (-) | 633 | WP_228768588.1 | hypothetical protein | - |
| KFU60_RS14655 (KFU60_14655) | - | 3030517..3031287 (-) | 771 | WP_228768607.1 | XRE family transcriptional regulator | - |
| KFU60_RS14660 (KFU60_14660) | - | 3031488..3031727 (+) | 240 | WP_194959141.1 | XRE family transcriptional regulator | - |
| KFU60_RS14665 (KFU60_14665) | - | 3031762..3032580 (+) | 819 | WP_194959142.1 | ORF6N domain-containing protein | - |
| KFU60_RS14670 (KFU60_14670) | - | 3032577..3032726 (+) | 150 | WP_021354148.1 | hypothetical protein | - |
| KFU60_RS14675 (KFU60_14675) | - | 3032792..3033016 (+) | 225 | WP_194959143.1 | hypothetical protein | - |
| KFU60_RS14680 (KFU60_14680) | - | 3033000..3033491 (-) | 492 | WP_211772729.1 | DUF2321 domain-containing protein | - |
| KFU60_RS14685 (KFU60_14685) | - | 3033553..3033876 (+) | 324 | WP_194959145.1 | DUF771 domain-containing protein | - |
| KFU60_RS14690 (KFU60_14690) | - | 3033958..3034110 (+) | 153 | WP_016375940.1 | hypothetical protein | - |
| KFU60_RS14695 (KFU60_14695) | - | 3034115..3034318 (+) | 204 | WP_194959146.1 | hypothetical protein | - |
| KFU60_RS14700 (KFU60_14700) | - | 3034336..3035223 (+) | 888 | WP_194959147.1 | DUF1351 domain-containing protein | - |
| KFU60_RS14705 (KFU60_14705) | - | 3035220..3035936 (+) | 717 | WP_249322084.1 | ERF family protein | - |
| KFU60_RS14710 (KFU60_14710) | - | 3035911..3036579 (+) | 669 | WP_194959149.1 | putative HNHc nuclease | - |
| KFU60_RS14715 (KFU60_14715) | ssb | 3036594..3037037 (+) | 444 | WP_194959150.1 | single-stranded DNA-binding protein | Machinery gene |
| KFU60_RS14720 (KFU60_14720) | - | 3037139..3037849 (+) | 711 | WP_228768589.1 | replication protein | - |
| KFU60_RS14725 (KFU60_14725) | - | 3037836..3038618 (+) | 783 | WP_211772730.1 | ATP-binding protein | - |
| KFU60_RS14730 (KFU60_14730) | - | 3038615..3038947 (+) | 333 | WP_194959153.1 | hypothetical protein | - |
| KFU60_RS14735 (KFU60_14735) | - | 3038944..3039282 (+) | 339 | WP_194959257.1 | hypothetical protein | - |
| KFU60_RS14740 (KFU60_14740) | - | 3039394..3039609 (+) | 216 | WP_004562022.1 | helix-turn-helix transcriptional regulator | - |
| KFU60_RS14745 (KFU60_14745) | - | 3039606..3040055 (+) | 450 | WP_194959154.1 | hypothetical protein | - |
| KFU60_RS14750 (KFU60_14750) | - | 3040058..3040441 (+) | 384 | WP_194959155.1 | DUF1064 domain-containing protein | - |
| KFU60_RS14755 (KFU60_14755) | - | 3040453..3041163 (+) | 711 | WP_194959156.1 | N-6 DNA methylase | - |
| KFU60_RS14760 (KFU60_14760) | - | 3041150..3042073 (+) | 924 | WP_194959157.1 | site-specific integrase | - |
Sequence
Protein
Download Length: 147 a.a. Molecular weight: 16151.84 Da Isoelectric Point: 5.1237
>NTDB_id=562291 KFU60_RS14715 WP_194959150.1 3036594..3037037(+) (ssb) [Lacticaseibacillus paracasei subsp. tolerans strain 2A]
MLNSVALTGRLTKPVDLRYTQSGTAVGSFTIAVDRQFRSANGERETDFINCAIWRKSAENFANFTHKGSLVGIEGHIQTR
TYDNAQGQRVYVTEVIVENFALLEPKGSSQGQPTQPTNQGYVGNQPANYTQPPASQPIDISDDDLPF
MLNSVALTGRLTKPVDLRYTQSGTAVGSFTIAVDRQFRSANGERETDFINCAIWRKSAENFANFTHKGSLVGIEGHIQTR
TYDNAQGQRVYVTEVIVENFALLEPKGSSQGQPTQPTNQGYVGNQPANYTQPPASQPIDISDDDLPF
Nucleotide
Download Length: 444 bp
>NTDB_id=562291 KFU60_RS14715 WP_194959150.1 3036594..3037037(+) (ssb) [Lacticaseibacillus paracasei subsp. tolerans strain 2A]
ATGCTTAATTCAGTTGCTTTAACAGGCAGATTAACTAAACCGGTTGATCTTCGCTATACGCAAAGTGGAACAGCAGTTGG
CTCATTTACTATTGCTGTTGATCGCCAATTTCGTAGCGCAAATGGGGAACGTGAAACTGACTTCATCAATTGTGCCATCT
GGCGTAAGTCTGCTGAGAATTTTGCCAACTTCACACATAAGGGTTCACTTGTTGGCATCGAAGGCCATATCCAAACGCGT
ACGTACGACAACGCACAGGGTCAACGAGTCTATGTGACCGAAGTCATCGTTGAGAATTTTGCGCTCTTGGAGCCTAAAGG
TTCATCGCAGGGACAACCAACTCAGCCGACTAATCAAGGATATGTGGGTAATCAACCAGCCAATTACACTCAACCGCCAG
CTAGTCAGCCAATCGATATCAGCGATGATGATCTTCCATTCTGA
ATGCTTAATTCAGTTGCTTTAACAGGCAGATTAACTAAACCGGTTGATCTTCGCTATACGCAAAGTGGAACAGCAGTTGG
CTCATTTACTATTGCTGTTGATCGCCAATTTCGTAGCGCAAATGGGGAACGTGAAACTGACTTCATCAATTGTGCCATCT
GGCGTAAGTCTGCTGAGAATTTTGCCAACTTCACACATAAGGGTTCACTTGTTGGCATCGAAGGCCATATCCAAACGCGT
ACGTACGACAACGCACAGGGTCAACGAGTCTATGTGACCGAAGTCATCGTTGAGAATTTTGCGCTCTTGGAGCCTAAAGG
TTCATCGCAGGGACAACCAACTCAGCCGACTAATCAAGGATATGTGGGTAATCAACCAGCCAATTACACTCAACCGCCAG
CTAGTCAGCCAATCGATATCAGCGATGATGATCTTCCATTCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
55.294 |
100 |
0.639 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
48.588 |
100 |
0.585 |
| ssb | Vibrio cholerae strain A1552 |
33.721 |
100 |
0.395 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
54.717 |
72.109 |
0.395 |
| ssb | Glaesserella parasuis strain SC1401 |
30.556 |
100 |
0.374 |