Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   KSO_RS17380 Genome accession   NC_020272
Coordinates   3596622..3597059 (+) Length   145 a.a.
NCBI ID   WP_003156588.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens IT-45     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3591622..3602059
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KSO_RS17365 (KSO_017850) - 3594480..3594842 (-) 363 WP_003156585.1 winged helix-turn-helix transcriptional regulator -
  KSO_RS17370 (KSO_017855) hxlA 3595074..3595709 (+) 636 WP_014304319.1 3-hexulose-6-phosphate synthase -
  KSO_RS17375 (KSO_017860) hxlB 3595706..3596263 (+) 558 WP_014304318.1 6-phospho-3-hexuloisomerase -
  KSO_RS17380 (KSO_017865) nucA/comI 3596622..3597059 (+) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  KSO_RS17385 (KSO_017870) nin/comJ 3597081..3597479 (+) 399 WP_003156589.1 competence protein ComJ Regulator
  KSO_RS17390 (KSO_017875) - 3597520..3597738 (-) 219 Protein_3503 family 1 glycosylhydrolase -
  KSO_RS20730 - 3597737..3598015 (-) 279 WP_107890409.1 family 1 glycosylhydrolase -
  KSO_RS17395 (KSO_017885) - 3597957..3598232 (-) 276 WP_369719109.1 YckD family protein -
  KSO_RS17400 (KSO_017890) - 3598349..3598783 (-) 435 WP_003156592.1 RDD family protein -
  KSO_RS17405 (KSO_017895) - 3598798..3599934 (-) 1137 WP_003156594.1 zinc-dependent alcohol dehydrogenase -
  KSO_RS17410 (KSO_017900) - 3599999..3601201 (-) 1203 WP_015388720.1 GTP-binding protein -
  KSO_RS20520 - 3601354..3601479 (+) 126 Protein_3509 hypothetical protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16072.35 Da        Isoelectric Point: 8.4850

>NTDB_id=56136 KSO_RS17380 WP_003156588.1 3596622..3597059(+) (nucA/comI) [Bacillus amyloliquefaciens IT-45]
MKTLKALLLVLIIIAGAVAALIKGDLFSDNEQTVQKSDYDKVILFPSDRYPETAKHIKDAIKEGHSSICTIDRDGVHKRR
EQSLKHVPVKTGYDRDEWPMAVCKQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLFKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=56136 KSO_RS17380 WP_003156588.1 3596622..3597059(+) (nucA/comI) [Bacillus amyloliquefaciens IT-45]
TTGAAAACATTAAAAGCACTGCTGCTTGTTCTTATCATCATTGCCGGAGCAGTCGCGGCCCTGATCAAGGGTGATCTTTT
CTCAGATAACGAGCAGACCGTTCAGAAGAGTGATTACGACAAAGTAATCCTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCGATAAAAGAAGGGCATTCCAGCATATGCACCATTGACAGAGACGGAGTACATAAGCGGCGT
GAGCAATCTCTTAAACATGTGCCTGTCAAAACGGGATACGATAGGGATGAATGGCCGATGGCGGTTTGTAAACAGGGCGG
AAACAATGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGAGCCGGCTCTTGGGTCGGACACCAGCTTACCAATG
ATCCCGACGGAACGAGAGTATTATTTAAAATCAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.81

86.897

0.641

Multiple sequence alignment