Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   KFF03_RS01410 Genome accession   NZ_CP073745
Coordinates   290374..291891 (+) Length   505 a.a.
NCBI ID   WP_255858493.1    Uniprot ID   A0A9J7AH48
Organism   Bacterioplanoides sp. SCSIO 12839     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 285374..296891
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KFF03_RS01395 (KFF03_01395) - 285503..286273 (+) 771 WP_255858490.1 SDR family oxidoreductase -
  KFF03_RS01400 (KFF03_01400) - 286357..287403 (+) 1047 WP_255858491.1 SMP-30/gluconolactonase/LRE family protein -
  KFF03_RS01405 (KFF03_01405) - 287510..290209 (-) 2700 WP_255858492.1 S8 family peptidase -
  KFF03_RS01410 (KFF03_01410) comM 290374..291891 (+) 1518 WP_255858493.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  KFF03_RS01415 (KFF03_01415) - 291925..293538 (-) 1614 WP_255858494.1 EAL domain-containing protein -
  KFF03_RS01420 (KFF03_01420) rep 293805..295832 (+) 2028 WP_255858495.1 DNA helicase Rep -
  KFF03_RS01425 (KFF03_01425) - 295839..296564 (-) 726 WP_255858496.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -

Sequence

Protein


Download         Length: 505 a.a.        Molecular weight: 55291.21 Da        Isoelectric Point: 6.7706

>NTDB_id=560369 KFF03_RS01410 WP_255858493.1 290374..291891(+) (comM) [Bacterioplanoides sp. SCSIO 12839]
MSLARIHTRAQLGIDAPRVYVEVHLSSGLPSLSLVGLPETAVKESKDRVRSAILNSGFEFPAKRITINLAPADLPKDGGR
YDLAIALGILVASEQVSEKRLEGHEFIGELALNGELQPIPGVLPAALQTAKSEQRLVLPESNAEEAALCTSGQFYAASSL
LEVTAYLQGQDSLRDIVPIDAAHIEKNPLMPDLLDVRGQPQAKRALEIAAAGQHNLLFIGPPGTGKTMLASRLPGIMPPM
SEEEALVSASIYSISNQQHDWQKQWRVRPFRSPHHTASGVALVGGGGKPKPGEISLAHGGVLFLDELPEYSRKVLDVLRE
PLESGRIVISRANRSMTYPANFQLIAAMNPCPCGYFGDPSGRCQCSTDQIRRYQGQASGPLLDRIDLHVEVPPIPTAMLQ
QAAQGDSTQTVQQRVMQARERQLQRQGCINAELGGDIRDQVCALQENDREWLLAAIETLNLSARAYHRVLKIARTIADLQ
VRESIERPHLLEALSYRTIDRYLQK

Nucleotide


Download         Length: 1518 bp        

>NTDB_id=560369 KFF03_RS01410 WP_255858493.1 290374..291891(+) (comM) [Bacterioplanoides sp. SCSIO 12839]
ATGTCACTCGCCCGAATTCATACCCGTGCCCAATTAGGTATCGATGCCCCTCGTGTTTATGTTGAGGTGCATCTCTCCAG
TGGTTTACCTTCTCTGAGTTTAGTGGGTTTACCAGAAACCGCTGTGAAAGAAAGTAAAGACCGGGTGCGCTCCGCCATTC
TGAACAGCGGCTTTGAATTTCCCGCTAAACGCATCACCATCAACCTGGCTCCGGCCGACTTACCCAAAGACGGTGGCCGT
TATGATCTGGCGATTGCGCTGGGTATTTTAGTGGCCTCAGAACAGGTTTCTGAAAAGCGCCTGGAAGGCCACGAATTTAT
TGGCGAGCTGGCACTAAACGGTGAACTACAACCGATTCCCGGGGTATTACCGGCGGCGTTGCAGACGGCCAAGTCGGAGC
AGCGCTTGGTGCTGCCCGAATCCAACGCAGAAGAAGCCGCGTTATGCACCAGCGGGCAGTTTTATGCTGCCAGTTCTTTG
TTGGAGGTTACGGCATACTTGCAGGGGCAGGATAGCCTGCGCGATATCGTGCCGATTGATGCCGCCCATATCGAGAAAAA
TCCGCTGATGCCGGACTTGCTCGATGTGCGTGGCCAGCCACAAGCCAAGCGGGCGTTAGAGATCGCTGCTGCTGGCCAGC
ATAACCTGCTGTTTATTGGCCCTCCGGGGACTGGCAAAACCATGTTAGCCAGCCGTTTGCCGGGTATTATGCCGCCGATG
TCAGAGGAGGAGGCGCTGGTATCGGCCTCAATTTATTCAATTTCTAATCAGCAACACGATTGGCAAAAGCAGTGGCGCGT
CCGCCCTTTTCGGTCCCCGCACCATACGGCTTCGGGTGTGGCATTGGTGGGCGGCGGTGGTAAACCCAAGCCCGGGGAAA
TTTCGCTGGCCCATGGTGGTGTGTTATTCCTCGATGAACTGCCGGAGTACAGTCGCAAAGTGTTGGACGTATTACGTGAG
CCATTAGAAAGCGGCCGTATTGTGATCAGTCGCGCCAACCGCTCTATGACCTATCCGGCAAATTTTCAGCTGATCGCTGC
CATGAATCCCTGTCCGTGTGGCTATTTTGGCGATCCTTCCGGGCGTTGCCAATGTTCGACTGATCAGATCCGACGTTATC
AGGGGCAGGCATCCGGGCCATTATTAGATCGGATTGACCTGCATGTGGAAGTGCCGCCGATCCCAACCGCGATGTTGCAA
CAAGCCGCACAAGGAGACTCAACCCAAACGGTTCAGCAGCGAGTGATGCAGGCGCGCGAACGCCAGTTACAGCGACAGGG
ATGTATTAATGCTGAATTGGGCGGCGATATCCGTGATCAGGTGTGCGCCTTGCAGGAAAATGATCGGGAGTGGCTGTTAG
CCGCCATTGAGACACTGAATTTATCGGCACGTGCCTATCACCGGGTGTTAAAAATCGCCCGTACAATTGCGGATTTGCAG
GTCAGAGAAAGTATCGAGCGGCCGCATTTGTTGGAAGCATTAAGCTACCGCACGATTGATCGCTATTTGCAGAAATAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(192-396)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(406-497)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.917

100

0.57
  comM Vibrio campbellii strain DS40M4

55.336

100

0.554
  comM Haemophilus influenzae Rd KW20

53.725

100

0.543
  comM Glaesserella parasuis strain SC1401

53.543

100

0.539
  comM Legionella pneumophila str. Paris

50.501

98.812

0.499
  comM Legionella pneumophila strain ERS1305867

50.501

98.812

0.499
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.01

100

0.455