Detailed information
Bioinformatically predicted
Overview
| Name | comGC | Type | Machinery gene |
| Locus tag | C663_RS12000 | Genome accession | NC_020244 |
| Coordinates | 2410534..2410830 (-) | Length | 98 a.a. |
| NCBI ID | WP_014477332.1 | Uniprot ID | - |
| Organism | Bacillus subtilis XF-1 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2405534..2415830
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C663_RS11955 (C663_2345) | tasA | 2405943..2406728 (-) | 786 | WP_003230183.1 | biofilm matrix protein TasA | - |
| C663_RS11960 (C663_2346) | sipW | 2406792..2407364 (-) | 573 | WP_080030740.1 | signal peptidase I | - |
| C663_RS11965 (C663_2347) | tapA | 2407348..2408109 (-) | 762 | WP_015384085.1 | amyloid fiber anchoring/assembly protein TapA | - |
| C663_RS11970 (C663_2348) | yqzG | 2408379..2408705 (+) | 327 | WP_015384086.1 | YqzG/YhdC family protein | - |
| C663_RS11975 (C663_2349) | spoIIT | 2408747..2408926 (-) | 180 | WP_003230176.1 | YqzE family protein | - |
| C663_RS11980 (C663_2350) | comGG | 2408998..2409372 (-) | 375 | WP_014480253.1 | ComG operon protein ComGG | Machinery gene |
| C663_RS11985 (C663_2351) | comGF | 2409373..2409756 (-) | 384 | WP_015384087.1 | ComG operon protein ComGF | Machinery gene |
| C663_RS11990 (C663_2352) | comGE | 2409782..2410129 (-) | 348 | WP_015384088.1 | ComG operon protein 5 | Machinery gene |
| C663_RS11995 (C663_2353) | comGD | 2410113..2410544 (-) | 432 | WP_015384089.1 | comG operon protein ComGD | Machinery gene |
| C663_RS12000 (C663_2354) | comGC | 2410534..2410830 (-) | 297 | WP_014477332.1 | comG operon protein ComGC | Machinery gene |
| C663_RS12005 | comGB | 2410844..2411881 (-) | 1038 | WP_015483430.1 | comG operon protein ComGB | Machinery gene |
| C663_RS12010 (C663_2356) | comGA | 2411868..2412938 (-) | 1071 | WP_015483431.1 | competence protein ComGA | Machinery gene |
| C663_RS12015 (C663_2358) | corA | 2413348..2414301 (-) | 954 | WP_015483432.1 | magnesium transporter CorA | - |
| C663_RS12020 (C663_2359) | yqhB | 2414444..2415772 (+) | 1329 | WP_003230150.1 | hemolysin family protein | - |
Sequence
Protein
Download Length: 98 a.a. Molecular weight: 10830.69 Da Isoelectric Point: 6.4730
>NTDB_id=56010 C663_RS12000 WP_014477332.1 2410534..2410830(-) (comGC) [Bacillus subtilis XF-1]
MNEKGFTLVEMLIVLFIISILLLITIPNVTKHNQTIQKKGCEGLQNMVKAQMTAFELDHEGQTPSLADLQSEGYVKKDAV
CPNGKHIIITGGEVKVEH
MNEKGFTLVEMLIVLFIISILLLITIPNVTKHNQTIQKKGCEGLQNMVKAQMTAFELDHEGQTPSLADLQSEGYVKKDAV
CPNGKHIIITGGEVKVEH
Nucleotide
Download Length: 297 bp
>NTDB_id=56010 C663_RS12000 WP_014477332.1 2410534..2410830(-) (comGC) [Bacillus subtilis XF-1]
ATGAATGAGAAAGGATTTACACTTGTTGAAATGTTAATTGTGCTCTTTATTATTTCGATCTTGCTTTTAATTACGATACC
GAACGTCACGAAACATAATCAAACCATTCAAAAAAAGGGCTGTGAAGGCCTACAAAACATGGTTAAGGCACAAATGACCG
CATTTGAGCTTGATCATGAAGGACAAACTCCGAGCCTTGCCGATTTACAGTCAGAGGGCTATGTGAAAAAGGATGCTGTC
TGTCCAAATGGGAAGCACATTATCATCACCGGCGGAGAAGTTAAGGTTGAACATTAA
ATGAATGAGAAAGGATTTACACTTGTTGAAATGTTAATTGTGCTCTTTATTATTTCGATCTTGCTTTTAATTACGATACC
GAACGTCACGAAACATAATCAAACCATTCAAAAAAAGGGCTGTGAAGGCCTACAAAACATGGTTAAGGCACAAATGACCG
CATTTGAGCTTGATCATGAAGGACAAACTCCGAGCCTTGCCGATTTACAGTCAGAGGGCTATGTGAAAAAGGATGCTGTC
TGTCCAAATGGGAAGCACATTATCATCACCGGCGGAGAAGTTAAGGTTGAACATTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGC | Bacillus subtilis subsp. subtilis str. 168 |
98.98 |
100 |
0.99 |
| comGC | Staphylococcus aureus MW2 |
41.304 |
93.878 |
0.388 |
| comGC | Staphylococcus aureus N315 |
41.304 |
93.878 |
0.388 |
| comYC | Streptococcus suis isolate S10 |
49.333 |
76.531 |
0.378 |