Detailed information    

insolico Bioinformatically predicted

Overview

Name   HI0659   Type   Machinery gene
Locus tag   SCSC_RS08400 Genome accession   NZ_AP014647
Coordinates   1717676..1717951 (+) Length   91 a.a.
NCBI ID   WP_006270606.1    Uniprot ID   -
Organism   Streptococcus constellatus subsp. constellatus strain CCUG 24889     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1712676..1722951
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SCSC_RS08375 (SCSC_1724) - 1713621..1713800 (-) 180 Protein_1630 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein -
  SCSC_RS08380 (SCSC_1725) - 1713885..1714901 (+) 1017 WP_006270605.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  SCSC_RS08385 (SCSC_1726) galU 1714929..1715828 (+) 900 WP_006270607.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  SCSC_RS08390 - 1716208..1717159 (-) 952 Protein_1633 IS481 family transposase -
  SCSC_RS08395 - 1717321..1717689 (+) 369 Protein_1634 type II toxin-antitoxin system RelE/ParE family toxin -
  SCSC_RS08400 (SCSC_1731) HI0659 1717676..1717951 (+) 276 WP_006270606.1 helix-turn-helix transcriptional regulator Machinery gene

Sequence

Protein


Download         Length: 91 a.a.        Molecular weight: 10058.42 Da        Isoelectric Point: 8.6401

>NTDB_id=56008 SCSC_RS08400 WP_006270606.1 1717676..1717951(+) (HI0659) [Streptococcus constellatus subsp. constellatus strain CCUG 24889]
MKTIKFNDFLNEQLNDNSFNEGYQAEKAILESALAVANARSKAGLTQRQLSELSHVPQSTIARIERGHNTSIETMSKLAV
ALKQELKISIG

Nucleotide


Download         Length: 276 bp        

>NTDB_id=56008 SCSC_RS08400 WP_006270606.1 1717676..1717951(+) (HI0659) [Streptococcus constellatus subsp. constellatus strain CCUG 24889]
ATGAAAACAATTAAATTCAATGATTTCTTAAATGAACAACTTAATGATAATTCTTTTAATGAGGGCTACCAAGCTGAAAA
AGCCATTTTAGAAAGTGCGCTAGCTGTTGCTAATGCTCGCTCAAAAGCAGGTCTAACACAACGCCAACTTTCAGAATTAT
CCCATGTTCCTCAATCAACTATCGCTCGTATTGAAAGAGGACATAACACTAGCATTGAAACTATGAGCAAATTAGCTGTA
GCTCTTAAGCAAGAACTAAAAATTAGTATTGGGTAG

Domains

Predicted by InterProScan.

Helix-turn-helix (HTH_3)

(39-83)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

40.741

89.011

0.363

Multiple sequence alignment