Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   KEC58_RS04410 Genome accession   NZ_CP073684
Coordinates   866845..867132 (+) Length   95 a.a.
NCBI ID   WP_106260102.1    Uniprot ID   -
Organism   Photobacterium damselae strain Pdd1605     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 861845..872132
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KEC58_RS04400 (KEC58_04400) hupB 864161..864433 (+) 273 WP_005298263.1 DNA-binding protein HU-beta -
  KEC58_RS04405 (KEC58_04405) ppiD 864784..866682 (+) 1899 WP_106339073.1 peptidylprolyl isomerase -
  KEC58_RS04410 (KEC58_04410) comEA 866845..867132 (+) 288 WP_106260102.1 ComEA family DNA-binding protein Machinery gene
  KEC58_RS04415 (KEC58_04415) - 867217..867555 (-) 339 WP_068947005.1 DUF1971 domain-containing protein -
  KEC58_RS04420 (KEC58_04420) rrtA 867642..868199 (-) 558 WP_284632496.1 rhombosortase -
  KEC58_RS04425 (KEC58_04425) - 868209..868829 (+) 621 WP_069531970.1 tRNA-uridine aminocarboxypropyltransferase -
  KEC58_RS04430 (KEC58_04430) - 868964..870292 (-) 1329 WP_176284450.1 anti-phage deoxyguanosine triphosphatase -
  KEC58_RS04435 (KEC58_04435) yfbR 870292..870876 (-) 585 WP_068947009.1 5'-deoxynucleotidase -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10428.13 Da        Isoelectric Point: 6.3453

>NTDB_id=559960 KEC58_RS04410 WP_106260102.1 866845..867132(+) (comEA) [Photobacterium damselae strain Pdd1605]
MKQGFVAVVMALAILLTPLAYAAKDKYEDIEIVVNINKANAEELDKLLVGIGPDKAENIIQYRKQNGKFATADDLAKVKG
IGPSTVEKNRDRIEL

Nucleotide


Download         Length: 288 bp        

>NTDB_id=559960 KEC58_RS04410 WP_106260102.1 866845..867132(+) (comEA) [Photobacterium damselae strain Pdd1605]
ATGAAACAAGGATTTGTTGCTGTAGTAATGGCATTAGCAATACTACTTACCCCGTTAGCTTATGCAGCGAAAGATAAGTA
CGAAGATATTGAAATTGTTGTCAATATTAATAAAGCAAATGCAGAAGAGTTAGATAAGTTACTGGTTGGAATCGGCCCAG
ATAAGGCTGAAAATATTATTCAATATCGTAAGCAGAATGGTAAATTTGCGACCGCGGATGATCTTGCTAAGGTAAAAGGC
ATTGGCCCCTCAACCGTAGAAAAAAACCGCGATCGCATTGAACTGTAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(33-93)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio parahaemolyticus RIMD 2210633

54.118

89.474

0.484
  comEA Vibrio campbellii strain DS40M4

53.488

90.526

0.484
  comEA Vibrio cholerae C6706

44.554

100

0.474
  comEA Vibrio cholerae strain A1552

44.554

100

0.474
  comEA Acinetobacter baylyi ADP1

57.812

67.368

0.389