Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   KDD30_RS16045 Genome accession   NZ_CP073578
Coordinates   3434602..3436128 (+) Length   508 a.a.
NCBI ID   WP_211646720.1    Uniprot ID   -
Organism   Photobacterium sp. GJ3     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3429602..3441128
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KDD30_RS16030 (KDD30_16030) - 3431331..3432266 (-) 936 WP_211646718.1 branched-chain amino acid transaminase -
  KDD30_RS16035 (KDD30_16035) ilvM 3432282..3432542 (-) 261 WP_211646719.1 acetolactate synthase 2 small subunit -
  KDD30_RS16040 (KDD30_16040) ilvG 3432539..3434187 (-) 1649 Protein_3092 acetolactate synthase 2 catalytic subunit -
  KDD30_RS16045 (KDD30_16045) comM 3434602..3436128 (+) 1527 WP_211646720.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  KDD30_RS16050 (KDD30_16050) - 3436237..3439008 (-) 2772 WP_211646721.1 hypothetical protein -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 54565.55 Da        Isoelectric Point: 8.0646

>NTDB_id=559332 KDD30_RS16045 WP_211646720.1 3434602..3436128(+) (comM) [Photobacterium sp. GJ3]
MTLAIVHSRACVGVDAPAVTVEVHLSNGLPAVNLVGLPETTVKEARDRVRSAIVNANFEFPARRITVNLAPADLPKEGGR
FDLPIALGILAASGQIPDSKLHNHEFLGELALSGELRPVKGALPAALAAKEANRCLVLPDANGDQAALVGRDKHKSAASL
LAVCGYLCGQEALSLHCREPGHREAVNHGRDMQDIIGQQQGKRALEIAAAGGHNLLFVGPPGTGKTMLASRLRDLLPEMA
VEEALETAAITSLTAQSLHAGNWRNRPFRAPHHSSSMAALVGGGSIPRPGEISLAHNGILFLDEMPEFERKVLDSLREPL
ESGEIVISRATSKTTFPARFQLIGALNPSPTGYYEGSQTRTNPQAILRYLGRLSGPLLDRFDMSIEIPALPRGTLSQGGD
RGETTAVITERVADARNRMRHRSGKINALLGTRELDEHCALAKPDAEFLEAALHQLGLSIRAYHRIIKVARTIADLAGKP
EIERAHLAEALGYRAMDRLLKQLTSQVV

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=559332 KDD30_RS16045 WP_211646720.1 3434602..3436128(+) (comM) [Photobacterium sp. GJ3]
ATGACACTGGCGATCGTTCATAGCAGGGCTTGTGTCGGTGTTGATGCACCGGCTGTTACCGTTGAAGTTCACCTCAGTAA
CGGCCTGCCAGCCGTCAATCTGGTCGGATTACCGGAGACCACCGTCAAGGAAGCAAGAGACCGGGTCAGAAGCGCGATTG
TGAATGCCAATTTCGAATTTCCGGCCCGGCGGATCACGGTCAATCTGGCTCCGGCGGATCTGCCGAAAGAAGGGGGGCGG
TTTGATCTGCCGATTGCTTTGGGGATTCTCGCAGCTTCCGGGCAAATTCCAGACAGTAAGCTGCACAATCATGAATTTTT
AGGGGAACTGGCTTTGTCGGGCGAATTGCGTCCTGTCAAAGGTGCCCTGCCCGCTGCGCTGGCAGCCAAAGAGGCCAACC
GCTGTCTGGTGCTGCCGGACGCCAATGGCGATCAGGCGGCGCTGGTGGGCCGCGACAAACACAAATCAGCCGCCAGTTTG
CTGGCTGTCTGCGGGTACCTGTGTGGTCAGGAAGCATTGTCACTGCATTGCCGGGAACCGGGCCACCGAGAGGCGGTGAA
TCACGGACGGGACATGCAGGACATTATCGGTCAGCAGCAAGGGAAACGGGCGCTGGAGATTGCTGCCGCTGGGGGGCACA
ATCTGTTGTTTGTCGGGCCGCCCGGTACCGGCAAGACGATGCTGGCCTCACGCCTGCGCGATCTGCTGCCTGAAATGGCC
GTGGAGGAAGCACTGGAAACTGCGGCAATCACTTCGCTGACGGCTCAGTCACTTCACGCGGGCAACTGGCGCAATCGCCC
GTTTCGCGCTCCCCATCATTCCAGTTCCATGGCAGCGCTGGTCGGCGGCGGCTCCATTCCCCGCCCTGGTGAAATCTCAC
TGGCCCACAACGGTATTCTGTTTCTGGACGAAATGCCGGAGTTTGAGCGCAAAGTGCTGGATTCGTTACGGGAACCGCTG
GAATCTGGCGAGATCGTGATTTCCCGAGCGACCAGCAAAACCACCTTTCCGGCCCGATTTCAGCTCATTGGAGCCCTCAA
TCCCAGCCCGACCGGCTACTACGAAGGCAGCCAGACCCGCACCAACCCACAGGCGATTTTACGCTATCTGGGGCGGCTCT
CCGGCCCGTTGCTCGACCGCTTCGACATGTCGATTGAAATTCCGGCGCTGCCCCGTGGCACTTTGTCCCAAGGCGGCGAT
CGTGGTGAAACCACCGCGGTGATCACGGAACGCGTGGCTGACGCCAGAAACCGGATGCGACATCGCAGCGGTAAAATCAA
TGCCCTGCTGGGCACCCGCGAACTGGACGAGCACTGCGCGCTGGCCAAACCCGACGCAGAATTTCTCGAAGCCGCCCTGC
ACCAGCTCGGCCTGTCGATCCGTGCTTATCACCGGATTATCAAAGTGGCTCGCACCATCGCCGATCTGGCCGGAAAACCT
GAGATTGAACGCGCCCATCTGGCCGAAGCCCTCGGCTACCGCGCCATGGATCGCCTGCTGAAGCAGCTCACGAGTCAGGT
GGTGTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-392)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

77.756

100

0.778
  comM Vibrio cholerae strain A1552

77.165

100

0.772
  comM Haemophilus influenzae Rd KW20

63.458

100

0.636
  comM Glaesserella parasuis strain SC1401

63.314

99.803

0.632
  comM Legionella pneumophila str. Paris

50.803

98.031

0.498
  comM Legionella pneumophila strain ERS1305867

50.803

98.031

0.498
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.281

99.606

0.431