Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   KDW95_RS15620 Genome accession   NZ_CP073347
Coordinates   3485226..3486749 (-) Length   507 a.a.
NCBI ID   WP_255852745.1    Uniprot ID   -
Organism   Marinobacterium rhizophilum strain D13-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3480226..3491749
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KDW95_RS15605 (KDW95_15525) - 3480494..3481054 (-) 561 WP_255852742.1 bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG -
  KDW95_RS15610 (KDW95_15530) rep 3481075..3483087 (-) 2013 WP_255852743.1 DNA helicase Rep -
  KDW95_RS15615 (KDW95_15535) - 3483406..3485118 (+) 1713 WP_255852744.1 EAL domain-containing protein -
  KDW95_RS15620 (KDW95_15540) comM 3485226..3486749 (-) 1524 WP_255852745.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  KDW95_RS15625 (KDW95_15545) - 3486861..3487124 (-) 264 WP_255852746.1 accessory factor UbiK family protein -
  KDW95_RS15630 (KDW95_15550) glnK 3487458..3487796 (+) 339 WP_255852747.1 P-II family nitrogen regulator -
  KDW95_RS15635 (KDW95_15555) - 3487839..3489113 (+) 1275 WP_255852748.1 ammonium transporter -
  KDW95_RS15640 (KDW95_15560) glnK 3489361..3489699 (+) 339 WP_255852749.1 P-II family nitrogen regulator -
  KDW95_RS15645 (KDW95_15565) - 3490175..3490978 (+) 804 WP_255852750.1 DUF1338 domain-containing protein -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 53326.58 Da        Isoelectric Point: 8.2866

>NTDB_id=559130 KDW95_RS15620 WP_255852745.1 3485226..3486749(-) (comM) [Marinobacterium rhizophilum strain D13-1]
MSLAVVHARAMLGIGAPAVTVEVHLSGGLPSLNIVGLPEAAVRESKDRVRSALINSGFDYPQRRITINLAPADLPKEGGR
YDLAIALGILLASRQLPPKALAGWEVLGELTLAGEIRPVRGVLPAAMACRDLSRALLVPRANGAEAALVQGCDVRVADHL
LQVCAALRGDGPLEPAIALAPPVRSGLPDLVEVKGQYQARRALEVAAAGSHNLLFSGPPGSGKSMLAARLPGLLPSLGEQ
ARLEVAAVYSVAGCAIDTVGHGNRPFRNPHHTASAVALVGGGSQPRPGEISLAHQGVLFLDELPEFPRTVLDVLREPLET
GEILISRAASQMLFPARFQLLAAMNPCPCGYFGDASSRCRCTPDQIQRYQGRISGPLLDRFDMQLNVQALDPAQLLDPAA
GRGEASAVVAQRVAAAMALQQARQGRPNRDLGAAELDEVCQLKGPQRTLLVNAATRLGLSARACHRILRVARTLADLAGE
ECVGDAQLLEALSFRQGLLRQGGTGGR

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=559130 KDW95_RS15620 WP_255852745.1 3485226..3486749(-) (comM) [Marinobacterium rhizophilum strain D13-1]
ATGTCACTTGCAGTGGTTCATGCCCGCGCAATGCTGGGTATCGGAGCGCCGGCGGTTACGGTGGAGGTGCACCTCTCGGG
GGGGTTGCCATCACTCAATATCGTCGGTCTTCCCGAGGCCGCTGTACGTGAAAGCAAGGACCGGGTGCGCAGCGCCCTGA
TCAATTCGGGTTTCGACTACCCGCAGCGTCGCATCACCATCAATCTGGCGCCTGCCGACCTGCCCAAGGAAGGCGGGCGC
TATGATCTGGCGATCGCGCTGGGCATCCTGCTGGCCTCCAGGCAGCTGCCGCCCAAAGCCCTGGCAGGCTGGGAAGTACT
GGGTGAATTGACCCTGGCGGGCGAAATACGACCGGTGCGAGGTGTGCTGCCGGCGGCGATGGCCTGCCGTGACCTGTCCC
GCGCGCTGCTGGTGCCACGGGCCAATGGCGCTGAAGCCGCCCTGGTGCAGGGCTGTGATGTACGGGTCGCCGATCACCTG
TTGCAGGTGTGTGCCGCGCTGCGCGGCGACGGCCCGCTGGAGCCTGCCATTGCGCTGGCGCCGCCGGTCAGATCCGGTCT
GCCGGACCTGGTTGAGGTCAAGGGGCAGTATCAGGCCCGTCGTGCGCTGGAGGTCGCCGCCGCCGGCAGCCACAATCTGC
TGTTCAGCGGGCCCCCCGGCAGTGGCAAGAGCATGCTGGCGGCGCGCCTGCCGGGCTTGCTGCCCAGTCTCGGGGAGCAG
GCGCGGCTGGAAGTGGCGGCGGTGTATTCGGTGGCCGGCTGCGCCATCGATACCGTTGGTCACGGCAACCGGCCCTTTCG
TAACCCGCACCATACTGCTTCGGCCGTGGCGCTGGTCGGGGGCGGCAGCCAGCCGCGTCCCGGTGAAATATCGCTGGCCC
ACCAGGGCGTACTGTTCCTTGATGAGCTGCCGGAGTTTCCCCGTACGGTGCTGGATGTGCTGCGCGAACCGCTGGAAACC
GGTGAAATCCTGATTTCCCGCGCCGCCAGCCAGATGCTTTTCCCCGCTCGGTTCCAGTTGCTGGCTGCCATGAACCCCTG
TCCCTGCGGCTATTTCGGCGATGCATCGAGCCGGTGTCGTTGCACGCCGGATCAGATACAGCGCTACCAGGGGCGGATCT
CGGGTCCGCTGCTGGATCGCTTCGACATGCAGCTAAACGTCCAGGCGCTGGATCCGGCCCAGCTGCTGGATCCGGCCGCG
GGTCGCGGTGAGGCCAGTGCCGTGGTGGCGCAGCGGGTGGCCGCTGCCATGGCGCTGCAGCAGGCGCGCCAGGGCCGGCC
CAATCGCGACCTGGGCGCCGCAGAACTGGACGAGGTGTGTCAGTTAAAGGGGCCGCAACGCACCCTGCTGGTCAATGCAG
CCACCAGGCTCGGGCTGTCGGCCCGCGCCTGTCACCGTATCCTGCGGGTGGCGCGCACCCTGGCGGACCTGGCTGGCGAG
GAGTGCGTCGGGGACGCCCAGTTGCTGGAGGCCCTGAGTTTTCGCCAGGGGTTGCTGCGCCAGGGCGGCACTGGCGGGCG
CTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-393)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-495)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

53.722

98.028

0.527
  comM Vibrio campbellii strain DS40M4

53.307

98.422

0.525
  comM Glaesserella parasuis strain SC1401

51.503

98.422

0.507
  comM Haemophilus influenzae Rd KW20

50.6

98.619

0.499
  comM Legionella pneumophila str. Paris

49.203

99.014

0.487
  comM Legionella pneumophila strain ERS1305867

49.203

99.014

0.487
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.643

99.408

0.444