Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   KD050_RS10795 Genome accession   NZ_CP073315
Coordinates   2128602..2129105 (-) Length   167 a.a.
NCBI ID   WP_211896132.1    Uniprot ID   -
Organism   Psychrobacillus sp. INOP01     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2123602..2134105
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KD050_RS10775 (KD050_10775) rplI 2124616..2125065 (-) 450 WP_211896128.1 50S ribosomal protein L9 -
  KD050_RS10780 (KD050_10780) - 2125062..2127038 (-) 1977 WP_211896129.1 DHH family phosphoesterase -
  KD050_RS10785 (KD050_10785) - 2127051..2127992 (-) 942 WP_211896130.1 YybS family protein -
  KD050_RS10790 (KD050_10790) rpsR 2128316..2128552 (-) 237 WP_211896131.1 30S ribosomal protein S18 -
  KD050_RS10795 (KD050_10795) ssbA 2128602..2129105 (-) 504 WP_211896132.1 single-stranded DNA-binding protein Machinery gene
  KD050_RS10800 (KD050_10800) rpsF 2129146..2129454 (-) 309 WP_211896133.1 30S ribosomal protein S6 -
  KD050_RS10805 (KD050_10805) - 2129621..2130172 (+) 552 WP_211896134.1 DUF3267 domain-containing protein -
  KD050_RS10810 (KD050_10810) ychF 2130418..2131518 (-) 1101 WP_211896135.1 redox-regulated ATPase YchF -
  KD050_RS10815 (KD050_10815) - 2131606..2131806 (-) 201 WP_211896136.1 DUF951 domain-containing protein -
  KD050_RS10820 (KD050_10820) - 2131849..2132667 (-) 819 WP_211896137.1 mechanosensitive ion channel family protein -
  KD050_RS10825 (KD050_10825) yyaC 2132746..2133345 (+) 600 WP_211896138.1 spore protease YyaC -
  KD050_RS10830 (KD050_10830) - 2133301..2134005 (-) 705 WP_211896139.1 DUF554 domain-containing protein -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 18492.20 Da        Isoelectric Point: 4.7719

>NTDB_id=559008 KD050_RS10795 WP_211896132.1 2128602..2129105(-) (ssbA) [Psychrobacillus sp. INOP01]
MINRVVLVGRLTKDPELRYTPSGVAMARFTLAVNRTFSNQQGEREADFINCVVWRKQAENTANYLKKGSLAGVEGRIQTG
SYEGQDGKRVYTTDVVADSVQFLEPRNGSGERNQGGQSSGGNGQQQFSTPSYQQNQPMNQQNYTRVDEDPFSNSSGPIEV
SDDDLPF

Nucleotide


Download         Length: 504 bp        

>NTDB_id=559008 KD050_RS10795 WP_211896132.1 2128602..2129105(-) (ssbA) [Psychrobacillus sp. INOP01]
ATGATTAACCGTGTCGTTTTAGTTGGAAGACTAACAAAAGATCCGGAACTTCGCTATACACCAAGTGGTGTTGCAATGGC
AAGATTTACACTAGCTGTAAATCGTACATTCTCCAACCAACAAGGTGAAAGAGAAGCTGATTTTATCAACTGTGTCGTTT
GGAGAAAGCAAGCTGAAAACACAGCAAACTACTTGAAAAAAGGAAGTTTAGCTGGTGTTGAAGGTCGCATTCAAACGGGT
AGTTATGAAGGACAAGATGGAAAACGTGTTTATACGACAGACGTTGTTGCAGACAGCGTTCAGTTCTTAGAACCACGTAA
TGGCTCTGGAGAACGCAACCAAGGTGGACAATCATCTGGTGGCAATGGACAGCAGCAATTTTCAACACCTTCATATCAAC
AAAACCAACCAATGAATCAGCAAAACTATACACGTGTAGATGAGGATCCTTTTTCTAATAGTAGTGGGCCAATCGAAGTA
TCGGATGACGACTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

61.494

100

0.641
  ssb Latilactobacillus sakei subsp. sakei 23K

54.023

100

0.563
  ssbB Bacillus subtilis subsp. subtilis str. 168

63.208

63.473

0.401
  ssb Neisseria gonorrhoeae MS11

36.364

100

0.383
  ssb Neisseria meningitidis MC58

35.593

100

0.377