Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   KDU74_RS14285 Genome accession   NZ_CP073310
Coordinates   2935751..2936275 (-) Length   174 a.a.
NCBI ID   WP_003860284.1    Uniprot ID   A0A9Q2WCG9
Organism   Enterobacter cloacae strain CZ862     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2930751..2941275
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KDU74_RS14255 (KDU74_14255) soxR 2931043..2931501 (-) 459 WP_013095072.1 redox-sensitive transcriptional activator SoxR -
  KDU74_RS14260 (KDU74_14260) soxS 2931599..2931925 (+) 327 WP_013095071.1 superoxide response transcriptional regulator SoxS -
  KDU74_RS14265 (KDU74_14265) - 2931932..2932366 (-) 435 Protein_2822 EAL domain-containing protein -
  KDU74_RS14275 (KDU74_14275) - 2933707..2934849 (-) 1143 Protein_2824 EAL domain-containing protein -
  KDU74_RS14280 (KDU74_14280) - 2935407..2935688 (+) 282 WP_008503385.1 YjcB family protein -
  KDU74_RS14285 (KDU74_14285) ssb 2935751..2936275 (-) 525 WP_003860284.1 single-stranded DNA-binding protein SSB1 Machinery gene
  KDU74_RS14290 (KDU74_14290) uvrA 2936527..2939349 (+) 2823 WP_178328441.1 excinuclease ABC subunit UvrA -
  KDU74_RS14295 (KDU74_14295) - 2939353..2939706 (-) 354 WP_013095068.1 MmcQ/YjbR family DNA-binding protein -
  KDU74_RS14300 (KDU74_14300) - 2939709..2940125 (-) 417 WP_178328440.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  KDU74_RS14305 (KDU74_14305) aphA 2940238..2940951 (-) 714 WP_013095066.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18650.66 Da        Isoelectric Point: 5.2456

>NTDB_id=558972 KDU74_RS14285 WP_003860284.1 2935751..2936275(-) (ssb) [Enterobacter cloacae strain CZ862]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGQEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQQSAPAP
SNEPPMDFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=558972 KDU74_RS14285 WP_003860284.1 2935751..2936275(-) (ssb) [Enterobacter cloacae strain CZ862]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATGCCGAGTGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGACAAAGCAACCGGTGAGATGAAAGAGCAGACCG
AATGGCACCGCGTTGTGCTGTTTGGCAAACTGGCAGAAGTGGCCGGTGAGTATCTGCGTAAAGGCTCTCAGGTTTATATT
GAAGGCCAACTGCGTACCCGCAAATGGACCGATCAATCCGGTCAGGAAAAGTACACCACTGAAGTGGTGGTAAACGTAGG
CGGCACCATGCAGATGCTGGGTGGCCGTCAGGGCGGCGGCGCACCAGCAGGTGGCGGCCAGCAGCAGGGCGGTTGGGGCC
AACCTCAGCAGCCACAGGGCGGCAACCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGCAGTCCGCTCCGGCACCG
TCTAACGAACCACCAATGGACTTCGACGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

76.667

100

0.793
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.609
  ssb Neisseria meningitidis MC58

47.191

100

0.483
  ssb Neisseria gonorrhoeae MS11

47.191

100

0.483
  ssbA Bacillus subtilis subsp. subtilis str. 168

36.111

100

0.374