Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   KC397_RS01510 Genome accession   NZ_CP073273
Coordinates   317645..318175 (+) Length   176 a.a.
NCBI ID   WP_020332215.1    Uniprot ID   S7JBV3
Organism   Vibrio fluvialis strain 19-VB00936     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 312645..323175
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KC397_RS01495 (KC397_01495) uvrA 312755..315577 (-) 2823 WP_044364108.1 excinuclease ABC subunit UvrA -
  KC397_RS01500 (KC397_01500) galU 315715..316584 (-) 870 WP_020433248.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  KC397_RS01505 (KC397_01505) qstR 316712..317362 (-) 651 WP_158125687.1 LuxR C-terminal-related transcriptional regulator Regulator
  KC397_RS01510 (KC397_01510) ssb 317645..318175 (+) 531 WP_020332215.1 single-stranded DNA-binding protein Machinery gene
  KC397_RS01515 (KC397_01515) csrD 318311..320305 (+) 1995 WP_020433244.1 RNase E specificity factor CsrD -
  KC397_RS01520 (KC397_01520) - 320313..321761 (+) 1449 WP_212571119.1 MSHA biogenesis protein MshI -
  KC397_RS01525 (KC397_01525) - 321758..322408 (+) 651 WP_212571121.1 MSHA biogenesis protein MshJ -
  KC397_RS01530 (KC397_01530) - 322401..322712 (+) 312 WP_100268583.1 MSHA biogenesis protein MshK -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 19526.69 Da        Isoelectric Point: 5.7626

>NTDB_id=558705 KC397_RS01510 WP_020332215.1 317645..318175(+) (ssb) [Vibrio fluvialis strain 19-VB00936]
MATRGVNKVILVGNLGSDPEVRYMPSGGAVANITVATSESWRDKATGEQREKTEWHRVALYGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYSTEIVVQGYNGTMQMLGGRQQGGMPAQGGGMNQPQQGGWGQPQQPAMQQHKPMQQQAPQQSQ
PQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=558705 KC397_RS01510 WP_020332215.1 317645..318175(+) (ssb) [Vibrio fluvialis strain 19-VB00936]
ATGGCAACCCGTGGCGTGAATAAAGTAATTTTGGTTGGCAACTTGGGTAGTGATCCGGAAGTTCGCTACATGCCAAGCGG
TGGCGCAGTTGCGAACATCACTGTAGCCACGTCAGAATCATGGCGTGATAAAGCAACCGGCGAACAGCGTGAGAAAACAG
AATGGCACCGTGTCGCTCTGTATGGAAAACTCGCAGAAGTCGCAGGTGAGTATCTGCGCAAAGGTTCTCAGGTTTACATC
GAAGGTCAGCTGCAAACACGTAAGTGGCAAGATCAAAGCGGTCAGGACCGCTACTCAACCGAAATCGTTGTACAGGGCTA
CAATGGCACTATGCAGATGCTCGGTGGCCGTCAGCAAGGTGGCATGCCTGCTCAGGGTGGCGGTATGAACCAGCCACAAC
AAGGCGGTTGGGGACAGCCTCAACAACCAGCCATGCAGCAGCACAAACCAATGCAGCAGCAGGCACCGCAGCAATCTCAG
CCGCAATACAATGAACCGCCAATGGATTTTGATGACGACATCCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB S7JBV3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

89.385

100

0.909
  ssb Glaesserella parasuis strain SC1401

55.738

100

0.58
  ssb Neisseria meningitidis MC58

46.739

100

0.489
  ssb Neisseria gonorrhoeae MS11

46.739

100

0.489