Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   KC397_RS01505 Genome accession   NZ_CP073273
Coordinates   316712..317362 (-) Length   216 a.a.
NCBI ID   WP_158125687.1    Uniprot ID   -
Organism   Vibrio fluvialis strain 19-VB00936     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 311712..322362
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KC397_RS01495 (KC397_01495) uvrA 312755..315577 (-) 2823 WP_044364108.1 excinuclease ABC subunit UvrA -
  KC397_RS01500 (KC397_01500) galU 315715..316584 (-) 870 WP_020433248.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  KC397_RS01505 (KC397_01505) qstR 316712..317362 (-) 651 WP_158125687.1 LuxR C-terminal-related transcriptional regulator Regulator
  KC397_RS01510 (KC397_01510) ssb 317645..318175 (+) 531 WP_020332215.1 single-stranded DNA-binding protein Machinery gene
  KC397_RS01515 (KC397_01515) csrD 318311..320305 (+) 1995 WP_020433244.1 RNase E specificity factor CsrD -
  KC397_RS01520 (KC397_01520) - 320313..321761 (+) 1449 WP_212571119.1 MSHA biogenesis protein MshI -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 24869.63 Da        Isoelectric Point: 9.2330

>NTDB_id=558704 KC397_RS01505 WP_158125687.1 316712..317362(-) (qstR) [Vibrio fluvialis strain 19-VB00936]
MQRANYARTIYYLCLDQTASAPPVLQSAFDLLAIPVPQIEPEQLLQAYQADKHKILLLNYDEHDAIRQRLAPLRLTSPHL
ETILFQVGKRLCTDDLLSFGNLKGLFYQSSEPEQIARGLAEIINGQNWLPRHVSSQLLHYYRHIFQNHHTKATIELTTRE
LQILRSLKTGASNMQMAESLFISEFTVKSHLYQIFKKLSVKNRTQAIAWANQNLLS

Nucleotide


Download         Length: 651 bp        

>NTDB_id=558704 KC397_RS01505 WP_158125687.1 316712..317362(-) (qstR) [Vibrio fluvialis strain 19-VB00936]
ATGCAACGAGCTAACTACGCCCGAACCATATATTACCTCTGTCTGGATCAGACAGCTTCCGCGCCGCCTGTCCTGCAATC
GGCTTTCGACCTACTGGCAATTCCGGTTCCCCAAATCGAACCGGAGCAGTTACTGCAGGCCTATCAGGCTGACAAACATA
AAATCCTGTTACTTAATTATGACGAACATGACGCAATACGCCAGCGGCTGGCACCACTGCGCCTGACCAGTCCGCATCTG
GAAACTATTCTGTTTCAAGTCGGCAAACGTTTGTGTACCGACGACCTGCTCAGTTTCGGCAACCTTAAAGGCTTATTCTA
CCAATCCAGCGAGCCTGAACAGATTGCGCGTGGACTGGCAGAAATCATCAACGGCCAGAATTGGTTGCCTCGTCATGTCA
GTAGCCAACTGTTGCACTACTATCGCCACATTTTTCAGAATCACCATACCAAGGCCACCATCGAACTCACCACGCGAGAA
CTACAGATTTTGCGCAGTCTAAAAACGGGCGCATCAAATATGCAGATGGCAGAAAGCTTATTTATCAGCGAATTTACCGT
CAAATCTCACCTCTATCAGATATTCAAAAAACTTTCGGTGAAAAACCGCACCCAAGCCATCGCCTGGGCGAACCAAAACC
TGCTCTCATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(156-210)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio cholerae strain A1552

69.767

99.537

0.694
  qstR Vibrio campbellii strain DS40M4

53.456

100

0.537
  qstR Vibrio parahaemolyticus RIMD 2210633

52.535

100

0.528