Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   KC397_RS00100 Genome accession   NZ_CP073273
Coordinates   22332..23855 (+) Length   507 a.a.
NCBI ID   WP_208592739.1    Uniprot ID   -
Organism   Vibrio fluvialis strain 19-VB00936     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 17332..28855
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KC397_RS00085 (KC397_00085) ilvE 18953..19894 (-) 942 WP_020332585.1 branched-chain-amino-acid transaminase -
  KC397_RS00090 (KC397_00090) ilvM 19906..20190 (-) 285 WP_014204160.1 acetolactate synthase 2 small subunit -
  KC397_RS00095 (KC397_00095) ilvG 20202..21848 (-) 1647 WP_154183791.1 acetolactate synthase 2 catalytic subunit -
  KC397_RS00100 (KC397_00100) comM 22332..23855 (+) 1524 WP_208592739.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  KC397_RS00105 (KC397_00105) - 23959..24852 (+) 894 WP_212570970.1 acyltransferase -
  KC397_RS00110 (KC397_00110) - 24894..25493 (-) 600 WP_024374484.1 thiol:disulfide interchange protein DsbA/DsbL -
  KC397_RS00115 (KC397_00115) - 25524..26510 (-) 987 WP_212570972.1 serine/threonine protein kinase -
  KC397_RS00120 (KC397_00120) ccoG 26555..27979 (-) 1425 WP_212570974.1 cytochrome c oxidase accessory protein CcoG -
  KC397_RS00125 (KC397_00125) - 28241..28507 (-) 267 WP_212570976.1 YihD family protein -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 55043.00 Da        Isoelectric Point: 8.2092

>NTDB_id=558701 KC397_RS00100 WP_208592739.1 22332..23855(+) (comM) [Vibrio fluvialis strain 19-VB00936]
MGLAIIHSRASIGVQAPAVTVEVHISNGMPGFTLVGLPETTVKESRDRVRSAIINSKFEFPAKRITVNLAPADLPKEGGR
FDLPIALGILAASDQIARTQLSDHEFIGELALSGEIRSVKGVLPAALAANQARRSLVVPHFNGDQAALVGKEQHKSARTL
LEVCADLCGQQTLSLFQSDGHDAAVPRERDLQDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLCDLLPEMTE
AEAMETASVASLTQQEINQHNWKQRPFRAPHHSSSMAALVGGGTIPRPGEISLAHNGLLFLDEMPEFERKVLDSLREPLE
SGEIIISRAQGKTRFPARFQLVGALNPSPTGYYEGNQARVNPQGILRYLSRLSGPLLDRFDMSIEIPALPKGTLSHGGDR
GEPTAVVQARVFRARETMLARSGKVNALLQSREIETYCPLSQPDAEFLENALHRLGLSIRAYHRIIKVARTIADLSGEAH
IQRAHLAEALGYRAMDRLLKQLTAQSV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=558701 KC397_RS00100 WP_208592739.1 22332..23855(+) (comM) [Vibrio fluvialis strain 19-VB00936]
ATGGGGCTTGCTATCATTCATAGCCGTGCCAGCATCGGTGTTCAGGCACCAGCGGTGACGGTGGAAGTACACATCAGTAA
CGGTATGCCGGGGTTTACGCTGGTTGGTTTGCCGGAGACAACCGTCAAAGAATCCCGCGATCGCGTGCGCAGCGCCATCA
TCAATTCCAAGTTTGAATTTCCCGCCAAACGCATTACCGTCAATTTAGCGCCCGCTGATCTGCCCAAAGAGGGCGGCCGT
TTTGATTTGCCGATCGCGCTCGGCATTCTGGCTGCTTCGGATCAGATTGCCCGCACCCAATTGAGCGACCATGAATTCAT
CGGTGAGTTGGCGCTGTCGGGGGAAATTCGCAGCGTGAAAGGCGTGCTGCCCGCAGCCTTGGCGGCCAATCAGGCGCGGC
GCAGTTTGGTGGTGCCCCATTTCAATGGCGATCAGGCGGCGCTGGTGGGGAAAGAGCAACATAAATCGGCGCGCACTCTG
CTTGAAGTGTGTGCCGATCTGTGTGGTCAACAGACGTTATCGCTGTTTCAAAGTGACGGGCACGACGCCGCCGTGCCGCG
CGAACGCGATTTGCAGGACATCATTGGTCAGCAGCAAGGCAAGCGGGCGTTGGAGATAGCGGCGGCGGGCAACCACAACC
TGTTGTTTCTTGGCCCGCCGGGCACGGGTAAAACTATGTTGGCCTCGCGCCTGTGCGATCTGCTGCCGGAGATGACTGAG
GCCGAGGCGATGGAGACTGCATCAGTGGCCTCGCTGACGCAGCAGGAAATCAACCAGCACAACTGGAAACAGCGTCCGTT
TCGCGCGCCGCATCATTCCAGCTCCATGGCAGCGCTGGTGGGCGGCGGCACCATTCCTCGTCCCGGAGAAATCTCACTTG
CTCACAATGGCCTGTTGTTTCTGGATGAAATGCCGGAATTTGAACGCAAAGTGCTCGATTCACTGCGCGAGCCGCTGGAG
TCGGGCGAGATTATTATTTCCCGCGCGCAGGGCAAAACCCGTTTCCCAGCGCGTTTTCAGTTGGTTGGCGCGCTCAATCC
CAGTCCGACCGGGTATTACGAAGGCAATCAGGCGCGGGTGAATCCGCAGGGGATTTTACGCTATTTGAGCCGTTTGTCGG
GGCCGCTGCTGGATCGCTTTGATATGTCGATCGAAATTCCGGCGTTGCCCAAAGGCACTTTGTCGCACGGCGGCGACCGC
GGCGAGCCGACGGCGGTGGTGCAGGCGCGGGTCTTTCGCGCACGTGAAACCATGCTGGCACGCAGTGGCAAAGTGAATGC
GCTGTTGCAAAGCCGTGAAATAGAAACTTATTGCCCGCTCAGTCAGCCGGATGCGGAATTTCTGGAAAATGCGCTGCACC
GCCTGGGGTTGTCAATCCGGGCCTATCACCGCATCATCAAAGTCGCGCGCACCATTGCCGATTTGAGCGGTGAGGCACAC
ATTCAACGGGCGCACCTGGCCGAAGCGCTCGGGTATCGCGCTATGGACCGGTTACTCAAACAGCTCACCGCCCAATCGGT
CTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

89.349

100

0.893
  comM Vibrio campbellii strain DS40M4

85.01

100

0.85
  comM Haemophilus influenzae Rd KW20

66.469

100

0.665
  comM Glaesserella parasuis strain SC1401

64.51

100

0.649
  comM Legionella pneumophila str. Paris

49.798

97.83

0.487
  comM Legionella pneumophila strain ERS1305867

49.798

97.83

0.487
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.688

99.803

0.426