Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   J9874_RS16430 Genome accession   NZ_CP073262
Coordinates   3565436..3566956 (+) Length   506 a.a.
NCBI ID   WP_225701177.1    Uniprot ID   -
Organism   Duffyella gerundensis strain AR     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 3560436..3571956
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J9874_RS16410 (J9874_03276) ilvE 3562010..3562939 (-) 930 WP_067426799.1 branched-chain-amino-acid transaminase -
  J9874_RS16415 (J9874_03277) ilvM 3562959..3563216 (-) 258 WP_067426797.1 acetolactate synthase 2 small subunit -
  J9874_RS16420 (J9874_03278) ilvG 3563213..3564859 (-) 1647 WP_067426794.1 acetolactate synthase 2 catalytic subunit -
  J9874_RS16425 ilvL 3565010..3565108 (-) 99 WP_187487116.1 ilv operon leader peptide -
  J9874_RS16430 (J9874_03279) comM 3565436..3566956 (+) 1521 WP_225701177.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  J9874_RS16435 (J9874_03280) - 3566985..3567323 (-) 339 WP_067426789.1 DUF413 domain-containing protein -
  J9874_RS16440 (J9874_03281) hdfR 3567445..3568272 (+) 828 WP_067426786.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54902.79 Da        Isoelectric Point: 7.2264

>NTDB_id=558590 J9874_RS16430 WP_225701177.1 3565436..3566956(+) (comM) [Duffyella gerundensis strain AR]
MSLSIVLTRALLGVNAPLVTVEVHISNGLPAFSLVGLPETTVKEARDRVRSAIINSGFSFPARRITVNLAPADLPKEGGR
YDLPIAIAVLVASEQVPADKLTQYEFLGELALTGALRGVQGAIPAAMAALAATRQLILSADNQADVGLIQQGQSLIGEHL
PDVCAFLHGKQELAAAEAQPYQEAVHSADLNDVTGQHQARRALEITAAGGHNLLLIGPPGTGKTMLATRLSGLMPPLTEQ
EALECAAIASLSDSGNLHKQWRQRPFRAPHHSASLFALIGGGSLPRPGEISLAHNGVLFLDELPEFERRVLDALREPIES
GEIAISRARAKVTYPARFQLIAAMNPSPTGHYQGNHNRCSPQQTLRYLSRLSGPFLDRFDLSLEVPLLPSGTLSQRESVN
ESSDVVRQRVQAARTIQLTRAGKVNAALNNKEIQQWCEIDMESAQWLENVLNTLGLSVRAWQRILKVSRTIADLAGKEGI
HREHLQEALSYRGIDRLLIHLHKSLE

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=558590 J9874_RS16430 WP_225701177.1 3565436..3566956(+) (comM) [Duffyella gerundensis strain AR]
ATGTCGCTTTCCATCGTATTAACACGCGCACTACTGGGCGTTAACGCGCCTCTGGTGACGGTTGAAGTCCACATCAGCAA
TGGATTGCCCGCCTTTTCTCTGGTGGGCCTGCCGGAGACCACCGTGAAAGAGGCACGCGATCGGGTACGCAGCGCCATTA
TCAATAGCGGCTTCAGCTTTCCTGCTCGCCGTATTACGGTAAATTTAGCGCCAGCAGATCTCCCTAAAGAAGGGGGACGT
TACGATCTGCCTATCGCTATTGCCGTTCTGGTCGCTTCAGAGCAGGTTCCTGCAGATAAGCTGACGCAGTATGAGTTTCT
GGGTGAGCTGGCGCTTACAGGCGCGCTAAGGGGCGTTCAGGGAGCAATCCCGGCGGCAATGGCTGCCCTGGCGGCGACGC
GGCAGCTAATCCTGTCTGCGGATAATCAGGCGGATGTTGGATTAATCCAACAAGGTCAGTCGTTAATCGGCGAACATCTG
CCGGATGTCTGTGCCTTTCTGCATGGTAAACAGGAGCTGGCTGCTGCGGAAGCTCAGCCTTATCAGGAAGCGGTACACAG
CGCAGATTTGAATGATGTTACCGGTCAGCATCAGGCGCGGCGCGCGCTGGAGATTACCGCGGCGGGCGGACACAACCTGC
TGCTGATTGGTCCGCCCGGTACCGGTAAAACAATGCTGGCCACACGCTTGTCGGGCCTGATGCCACCATTGACGGAACAG
GAGGCGCTGGAATGCGCCGCTATTGCCAGCTTGTCTGACAGCGGCAACCTGCATAAACAGTGGCGACAGCGCCCTTTTCG
CGCGCCTCATCATAGCGCATCGCTATTTGCGCTCATTGGCGGTGGTAGTTTGCCCCGACCCGGCGAGATTTCACTGGCGC
ATAATGGCGTACTCTTTCTTGATGAACTCCCGGAGTTTGAGCGTCGTGTGCTGGATGCCTTACGCGAACCGATTGAGTCC
GGTGAAATCGCTATATCACGGGCGCGAGCGAAGGTGACATATCCGGCTCGCTTTCAACTTATTGCAGCCATGAATCCAAG
CCCAACAGGGCATTATCAAGGCAACCATAACCGCTGTTCGCCACAGCAGACGCTGCGCTATCTCAGTCGCCTGTCGGGCC
CATTTTTAGATCGCTTTGATCTTTCGCTGGAGGTGCCTTTATTGCCCTCAGGCACGTTAAGTCAGCGAGAAAGTGTTAAT
GAATCGAGTGACGTGGTTCGCCAGCGCGTGCAGGCGGCGCGCACAATACAGCTGACGCGTGCGGGAAAGGTCAATGCAGC
GCTCAATAACAAAGAGATTCAACAGTGGTGCGAGATCGATATGGAAAGTGCGCAGTGGCTGGAAAATGTATTAAACACGC
TGGGGCTATCGGTAAGAGCGTGGCAGCGAATCCTAAAGGTCTCGCGTACTATTGCCGATTTAGCAGGTAAGGAAGGTATA
CATCGGGAGCATCTTCAGGAAGCGTTAAGTTATCGCGGCATTGATCGGTTGTTGATTCATTTGCATAAAAGCCTGGAATA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

61.538

100

0.617
  comM Glaesserella parasuis strain SC1401

60.552

100

0.607
  comM Vibrio cholerae strain A1552

59.761

99.209

0.593
  comM Vibrio campbellii strain DS40M4

59.163

99.209

0.587
  comM Legionella pneumophila str. Paris

49.095

98.221

0.482
  comM Legionella pneumophila strain ERS1305867

49.095

98.221

0.482
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.135

99.407

0.439