Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | GHH_RS17625 | Genome accession | NC_020210 |
| Coordinates | 3566362..3566856 (-) | Length | 164 a.a. |
| NCBI ID | WP_015376126.1 | Uniprot ID | A0A1V9C2L1 |
| Organism | Geobacillus sp. GHH01 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 3561362..3571856
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GHH_RS17605 (GHH_c35670) | rplI | 3562496..3562945 (-) | 450 | WP_015376124.1 | 50S ribosomal protein L9 | - |
| GHH_RS17610 (GHH_c35680) | - | 3562942..3564918 (-) | 1977 | WP_015376125.1 | DHH family phosphoesterase | - |
| GHH_RS17615 (GHH_c35690) | - | 3564965..3565891 (-) | 927 | WP_011232943.1 | YybS family protein | - |
| GHH_RS17620 (GHH_c35700) | rpsR | 3566028..3566264 (-) | 237 | WP_008880812.1 | 30S ribosomal protein S18 | - |
| GHH_RS17625 (GHH_c35710) | ssbA | 3566362..3566856 (-) | 495 | WP_015376126.1 | single-stranded DNA-binding protein | Machinery gene |
| GHH_RS17630 (GHH_c35720) | rpsF | 3566887..3567174 (-) | 288 | WP_011232945.1 | 30S ribosomal protein S6 | - |
| GHH_RS17635 (GHH_c35730) | ychF | 3567389..3568489 (-) | 1101 | WP_015376127.1 | redox-regulated ATPase YchF | - |
| GHH_RS17640 (GHH_c35740) | - | 3568729..3570750 (-) | 2022 | WP_013524882.1 | molybdopterin-dependent oxidoreductase | - |
| GHH_RS17645 (GHH_c35750) | - | 3570807..3571004 (-) | 198 | WP_011232948.1 | DUF951 domain-containing protein | - |
Sequence
Protein
Download Length: 164 a.a. Molecular weight: 18409.30 Da Isoelectric Point: 4.7126
>NTDB_id=55859 GHH_RS17625 WP_015376126.1 3566362..3566856(-) (ssbA) [Geobacillus sp. GHH01]
MINRVILVGRLTRDPELRYTPSGVAVATFTLAVNRPFTNQQGERETDFIQCVVWRRQAENVANFLKKGSLAGVDGRLQTR
SYENQEGRRVYVTEVVADSVQFLEPKGTSEQRGATAGGYYGDPFPFGQDQNHRHPDEKGFGRIDDDPFANDGQPIDISDD
DLPF
MINRVILVGRLTRDPELRYTPSGVAVATFTLAVNRPFTNQQGERETDFIQCVVWRRQAENVANFLKKGSLAGVDGRLQTR
SYENQEGRRVYVTEVVADSVQFLEPKGTSEQRGATAGGYYGDPFPFGQDQNHRHPDEKGFGRIDDDPFANDGQPIDISDD
DLPF
Nucleotide
Download Length: 495 bp
>NTDB_id=55859 GHH_RS17625 WP_015376126.1 3566362..3566856(-) (ssbA) [Geobacillus sp. GHH01]
ATGATTAACCGCGTCATTTTGGTCGGCAGGTTAACGAGAGATCCGGAGTTGCGTTACACTCCAAGCGGAGTGGCTGTTGC
CACGTTTACGCTCGCGGTCAACCGTCCGTTTACAAATCAGCAGGGCGAGCGGGAAACGGATTTTATTCAGTGTGTCGTTT
GGCGCCGCCAGGCGGAAAACGTCGCCAACTTTTTGAAAAAGGGGAGCTTGGCTGGTGTCGATGGCCGACTGCAAACCCGC
AGCTATGAAAATCAAGAAGGTCGGCGCGTGTACGTGACGGAAGTGGTGGCTGATAGCGTCCAATTTCTTGAGCCGAAAGG
AACGAGCGAGCAGCGAGGGGCAACAGCAGGCGGCTACTACGGGGATCCATTCCCATTCGGACAAGATCAGAACCACCGAC
ATCCCGATGAAAAAGGGTTTGGCCGCATCGATGACGATCCTTTCGCCAATGACGGCCAGCCGATCGATATTTCTGATGAT
GATTTGCCGTTTTAA
ATGATTAACCGCGTCATTTTGGTCGGCAGGTTAACGAGAGATCCGGAGTTGCGTTACACTCCAAGCGGAGTGGCTGTTGC
CACGTTTACGCTCGCGGTCAACCGTCCGTTTACAAATCAGCAGGGCGAGCGGGAAACGGATTTTATTCAGTGTGTCGTTT
GGCGCCGCCAGGCGGAAAACGTCGCCAACTTTTTGAAAAAGGGGAGCTTGGCTGGTGTCGATGGCCGACTGCAAACCCGC
AGCTATGAAAATCAAGAAGGTCGGCGCGTGTACGTGACGGAAGTGGTGGCTGATAGCGTCCAATTTCTTGAGCCGAAAGG
AACGAGCGAGCAGCGAGGGGCAACAGCAGGCGGCTACTACGGGGATCCATTCCCATTCGGACAAGATCAGAACCACCGAC
ATCCCGATGAAAAAGGGTTTGGCCGCATCGATGACGATCCTTTCGCCAATGACGGCCAGCCGATCGATATTTCTGATGAT
GATTTGCCGTTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
66.667 |
100 |
0.707 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
60.588 |
100 |
0.628 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
63.208 |
64.634 |
0.409 |
| ssb | Vibrio cholerae strain A1552 |
35.028 |
100 |
0.378 |
| ssb | Glaesserella parasuis strain SC1401 |
32.432 |
100 |
0.366 |